Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2708 ATGGATTTGCTCCGATCAAATCTCTCTCGTGTTCGAATCCCAGAACCCACCAATCGCGTCTACAAGCAAGAATGCTGCTTATCCTTCGACACTCCTATGTCAGAAGGTGGGTTGTTCATTGACATGTTTAATTTTCTTGCATTTGGGAAGGATTATGTGGGTTGGAACTTTGAAAAGACTGGAAATCCGGTTTATTTGCATGTGAAGAAGACGAAGAAGCCGGTTCCGGAAGATAGGCCTTTGAAGAAACCTACCCTGTTGGCTATAGGTATTGATGGGGGATTTGATAACAATGAGGCTGACTATGAAGAAACTCATAATATTGTTATATTACCTGACTATGTTTCACTTTCATATCCTTCCGTGGAATTACCGGAGAAGGTAAGATTGGCGGCTGATGCTATATTACTAGATGCGGGTGCTGAACGGAAGGAGCAAGTTGCAGCATGGACAGCTGATAAGAAACTCGTCAGTGTCTATGCAACGAATTTACAGCAAATTGACAATGGTGTTGTTATTCCCCCAACTGGGTGGAAATGCTCCCAATGTGACAAGACAGACAATCTTTGGTTAAATTTGACTGATGGAGTGATCCTTTGTGGGAGGAAAAACTGGGATGGAAGTGGCGGAAACAACCATGCAGTTGAACATTACAAAAAGACAGGCTACCCACTCGCCGTAAAGCTCGGGACTATTACTGCTGATCTGGAAGCAGCAGATGTTTTCTCATATCCGGAGGATGATAATGTGTTGGACCCACTTTTAGCACAACATCTGGCATTTTTTGGCATTGATTTCTCATCACTACAAAAGACTGAAATGACTACGGCTGAAAAAGAACTCGACCAAAATACCAATTTTGAGTGGAATAGAATCCAAGAAAGTGGGCAGGAAGTGGAACCAATTTTTGGACCTGGATACACAGGATTGGTCAATCTTGGAAACAGTTGTTATTTGGCAGCAACTATGCAAGCTGTATTTTCAGCACGATCTTTCTCTTCAAGGTACTACATAAACCAAAGTCTAAAGAAGGCATTTGAGGAGGCTCCTGCTGATCCAACTGTGGACCTCAACATGCAGTTGACGAAACTTGCACACGGTTTACTGTCTGGCAAATATTCTGTTCCACAAGTTGAGGAGCAAGAAGGGATACCACCACGTATGTTCAAAACTTTAGTCGCTGCCAGCCATCCAGAATTTTCTACTATGCGACAACAGGATGCTTTAGAATTTTTCCTTCATTTTCTTGACCAAGTGGAACGTTCTAATGCTGGGAAAACTGAACTGGATCCCGCAAGGAGTTTCAAGTTTGGTGTTGAAGATCGTATCTTGTGTTCATCGGGAAAAGTTGCATACAATAGAAGGAACGACTATATTCTTTCTCTGAATATTCCATTGCATGAAGCAACTAACAAAGAAGAATTGGAATTGTTTCACAAGCTGAAAGCAGAGAAACTTTCTGAGGGAAAAGAAGTGTCTGGTGATGAGGTTGTACGTCCAAGGGTGCCTTTAGAAGCTTGCCTTGCAAGCTTCTCAGCTCCCGAGGAGGTACATGATTTTTACAGCACTGCTTTGCAAATGAAGACAACAGCAGTGAAGTCGGCTGGTCTGACATCATTTCCGGATTATCTGGTCTTGCACATGCGCAAATTTGTTATGGAGGAGGGATGGGTACCCAAAAAACTCGATGTATATGTTGACGTTCCTGATATCATAGATATCAGTCACATGCGTAGCAAAGGTCATCAACCTGGGGAAGAGCTTCTACCAGATGGGGTACCGATCGAGGATGATTCAGAAATACCTTTAGCCAATGAAGACATTGTTGCACAGCTGGTGTCTATGGGCTTTAACCAGATTCATTGTCAAAAAGCTGCTATTAATACATCAAATGCTGGAGTAGAAGAGGCAATGACTTGGTTACTAGCTCACATGGAGGATCCAGATATTGACGCTCCCATTTTGAGAGGGCGTGGGTCTGAAAGTGTTGACCAGTCAAAAGTTGATATGCTACTTTCATTTGGATTTCAAGATGACGTTGCTCGAAAGGCCCTGATAGCATCGGGTGGTGACATTGAGAAAGCAACAGACTGGATCTTCAGCAATCCCGATGCATCCGTTTCCAACATGGATGCTACTGCATCAAACACTACATCTGGTCCAAATGATGCTGACTTACCCGATGGAGGAGGAAGATATCGACTTATGGGAATTGTTAGCCACATTGGAACCTCAACACACTGCGGTCACTATGTTGCACACATCTTGAAAGATGGTAGATGGGTTATTTTTAACGACAACAAGGTAGGGGCTTCCATTAATCCTCCCAAGGACATGGGCTATCTTTACTTTTTCGAGAGGCTTTGA 2367 0.4313 MDLLRSNLSRVRIPEPTNRVYKQECCLSFDTPMSEGGLFIDMFNFLAFGKDYVGWNFEKTGNPVYLHVKKTKKPVPEDRPLKKPTLLAIGIDGGFDNNEADYEETHNIVILPDYVSLSYPSVELPEKVRLAADAILLDAGAERKEQVAAWTADKKLVSVYATNLQQIDNGVVIPPTGWKCSQCDKTDNLWLNLTDGVILCGRKNWDGSGGNNHAVEHYKKTGYPLAVKLGTITADLEAADVFSYPEDDNVLDPLLAQHLAFFGIDFSSLQKTEMTTAEKELDQNTNFEWNRIQESGQEVEPIFGPGYTGLVNLGNSCYLAATMQAVFSARSFSSRYYINQSLKKAFEEAPADPTVDLNMQLTKLAHGLLSGKYSVPQVEEQEGIPPRMFKTLVAASHPEFSTMRQQDALEFFLHFLDQVERSNAGKTELDPARSFKFGVEDRILCSSGKVAYNRRNDYILSLNIPLHEATNKEELELFHKLKAEKLSEGKEVSGDEVVRPRVPLEACLASFSAPEEVHDFYSTALQMKTTAVKSAGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYVDVPDIIDISHMRSKGHQPGEELLPDGVPIEDDSEIPLANEDIVAQLVSMGFNQIHCQKAAINTSNAGVEEAMTWLLAHMEDPDIDAPILRGRGSESVDQSKVDMLLSFGFQDDVARKALIASGGDIEKATDWIFSNPDASVSNMDATASNTTSGPNDADLPDGGGRYRLMGIVSHIGTSTHCGHYVAHILKDGRWVIFNDNKVGASINPPKDMGYLYFFERL* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2708 788 CDD Peptidase_C19B 309 786 - -
Mtr2g2708 788 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 253 IPR013083 -
Mtr2g2708 788 ProSiteProfiles Zinc finger UBP-type profile. 156 266 IPR001607 GO:0008270
Mtr2g2708 788 SMART Zf_UBP_1 179 234 IPR001607 GO:0008270
Mtr2g2708 788 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 308 788 IPR028889 -
Mtr2g2708 788 Gene3D Cysteine proteinases 301 788 - -
Mtr2g2708 788 Gene3D - 602 648 - -
Mtr2g2708 788 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 309 324 IPR018200 GO:0004843|GO:0006511
Mtr2g2708 788 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 106 IPR013083 -
Mtr2g2708 788 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 788 - -
Mtr2g2708 788 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 662 702 IPR015940 -
Mtr2g2708 788 Pfam Ubiquitin carboxyl-terminal hydrolase 308 785 IPR001394 GO:0004843|GO:0016579
Mtr2g2708 788 SUPERFAMILY UBA-like 635 704 IPR009060 GO:0005515
Mtr2g2708 788 SUPERFAMILY RING/U-box 159 266 - -
Mtr2g2708 788 CDD UBA1_atUBP14 605 649 - -
Mtr2g2708 788 Pfam Variant UBP zinc finger 11 74 IPR041432 -
Mtr2g2708 788 Pfam UBA/TS-N domain 664 699 IPR015940 -
Mtr2g2708 788 Pfam UBA/TS-N domain 605 641 IPR015940 -
Mtr2g2708 788 Pfam Zn-finger in ubiquitin-hydrolases and other protein 180 253 IPR001607 GO:0008270
Mtr2g2708 788 SMART uba_6 605 643 IPR015940 -
Mtr2g2708 788 SMART uba_6 664 701 IPR015940 -
Mtr2g2708 788 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 603 644 IPR015940 -
Mtr2g2708 788 Gene3D - 657 720 - -
Mtr2g2708 788 PIRSF UBP 3 788 IPR016652 GO:0004843|GO:0016579
Mtr2g2708 788 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 788 - -
Mtr2g2708 788 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 733 751 IPR018200 GO:0004843|GO:0006511
Mtr2g2708 788 SUPERFAMILY Cysteine proteinases 304 787 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2708 Mtr-Chr2 40153819 40162956 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2708 K11836 - cpap:110820639 1340.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2708 2 40153819 40162956 Mtr2g2708 2 40153819 40162956 ECH