Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04493 ATGGATTTACTCCGATCAAATCTTTCTCGTGTTCGAATTCCCGAACCAACCAATCGCGTCTATAAGCAAGAATGTTGCTTATCTTTCGACACTCCTaTGTCAGAAGGTGGATTATTCATCGATATGTTTACTTTTCTTGCTTTTGGAAAAGATTATGTTGGTTGGAATTTTGAAAAGACTGGAAATCCTGTTTATTTGCATATTAAGAAGACTAAGAAATTGGTTCCTGAAGATAGACCTTCGAAGAAACCTACTCTATTGGCTATAGGTGTTGATGGGGGATTTGATAATAACGATGCGGAATATGAAGAAACACTTAATATAGTTATATTACCGGACTATGTTTCTCTTAAGTTTCCTTCCGTGGAATTGCCGGAGAAGGTAAGGTTGGCAGTTGATGCTATATTGCTGGACGCTGGTGCTGAACGGAAGGAGCAAGTTGCAGCTTGGACTGCTGATAAGAAACTCGTCAGTACCTATGCAATGAGTTTACAACAAATTGACAATGGTGTTGTTATTCCTCCATCTGGGTGGAAATGTTCTCAGTGTGACAAGACGGACAATCTTTGGTTAAATTTGACCGACGGAGTGATCCTTTGTGGGAGGAAAAATTGGGATGGAAGTGGCGGAAACAACCATGCTGTTGAACATTATAAAAAGACAGGCTACCCACTTGCCGTAAAGCTCGGGACTATTACTGCTGATCTGGAAGCAGCAGATGTTTACTCATATCCGGAGGATGATAACGTGTTAGATCCACTTTTAGCACAACATCTGGCATTTTTTGGCATTGATTTCTCCTCACTGCAAAAGACTGAAATGACAACTGCTGAAAAAGAACTCGACCAAAATACCAATTTTGAATGGAATAGAATCCAAGAAAGTGGACAGGAAGTGGAACCAATTTTTGGGCCTGGATACACGGGATTGGTCAATCTTGGAAACAGtTGCTACTTGGCAGCAACTATGCAAGCTGTATTTTCAGCACGATCTTTCTCTTCAAGGTACTATATAAACCAAAGTCTAAAGAAGGCATTTGAGGCTGCTCCTGCTGATCCAACTGTGGACCTCAATATGCAGTTgacaaAATTGGCACATGGTTTACTATCTGGCAAATATTCTGTTCCAAAATTTGAGAATGATGACAACAAAAACATTGCAACCACCCCTACATCTGCGGTGCAGGAAGGGATACCACCACGTATGTTTAAAGCTTTAGTTGCTGCCAGTCATCCGGAATTTTCATCTATGCGGCAACAGGATGCTTTAGAATTTTTCCTTCACTTTCTGGACCAAGTGGAACGAGCTAATGGTGGGAAAACTGAACTGGATCCTGCAAGGAGTTTTAAGTTTGGCGTTGAAGATCGAATCTTGTGTTCATCTGGAAAAGTTGCGTACAATAGAAGGAATGACTACATTCTTTCTCTGAATATCCCACTGCACCAAGCAACTAACAAAGAAGAATTGGAATTGTTTCACAAACTAAAAGCAGAGAAACTTTCTGAAGGAAAAGAAGTGTCTAGTGATGAGATTGTACGTCCAAGGGTGCCTTTAGAAGCTTGCCTAGCAAACTTCTCAGCTCCAGAGGAGATACATGATTTTTACAGCACTGCTTTGCAAACAAAGACAACAGCGCTGAAATCGGCTGGTCTGACATCATTCCCTGATTACCTGGTGTTGCACATGCGGAAATTCGTTATGGAAGAGGGATGGGTACCCAAAAAGCTTGATGTATATGTTGACGTTCCTGATATCATAGATATCAGTCATATGCGTAGCAAAGGTCATCAACCTGGGGAAGAGCTTCTACCAGATGGGGTACCTGTTGAGGATGATTCAGAAGCACCTTTAGCCAATGAAGAGATTGTTGCCCAGCTGGTTTCTATGGGCTTTAACCAAATTCATTGTCAAAAAGCTGCTATAAATACATCAAATTCTGGAGTAGAAGAGGCAATGACATGGTTACTATCTCACATGGATGATCCAGATATTGACGCTCCTATTTCGAAAGGGAGTGGCTCCGAAAGTGTTGACCAGTCAAAAGTTGATACGCTAATTTCATTTGGATTTCAAGACGACGTTGCTCGAAAGGCACTGAAGGCATCGGGTGGTGACATAGAGAAAGCAACAGACTGGATCTTTAGCAATCCTGATGCATCTGTTTCCAACATGGATGCTACTGCATCAAGCACTACATCTGGTCCAAATGATGCCGACTTACCTGATGGAGGAGGAAGATACCGACTAACGGGAATTGTTAGCCACATCGGAACCTCAACACACTGTGGTCACTATGTTGCACACATCTTAAAAGATGGTAGATGGGTTATTTTTAACGACAACAAGGTAGGAGCTTCCATTAATCCTCCCAAGGACATGGGCTATCTTTACTTTTTCGAGAGGCTCGACTCTTGA 2415 0.4174 MDLLRSNLSRVRIPEPTNRVYKQECCLSFDTPMSEGGLFIDMFTFLAFGKDYVGWNFEKTGNPVYLHIKKTKKLVPEDRPSKKPTLLAIGVDGGFDNNDAEYEETLNIVILPDYVSLKFPSVELPEKVRLAVDAILLDAGAERKEQVAAWTADKKLVSTYAMSLQQIDNGVVIPPSGWKCSQCDKTDNLWLNLTDGVILCGRKNWDGSGGNNHAVEHYKKTGYPLAVKLGTITADLEAADVYSYPEDDNVLDPLLAQHLAFFGIDFSSLQKTEMTTAEKELDQNTNFEWNRIQESGQEVEPIFGPGYTGLVNLGNSCYLAATMQAVFSARSFSSRYYINQSLKKAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPKFENDDNKNIATTPTSAVQEGIPPRMFKALVAASHPEFSSMRQQDALEFFLHFLDQVERANGGKTELDPARSFKFGVEDRILCSSGKVAYNRRNDYILSLNIPLHQATNKEELELFHKLKAEKLSEGKEVSSDEIVRPRVPLEACLANFSAPEEIHDFYSTALQTKTTALKSAGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYVDVPDIIDISHMRSKGHQPGEELLPDGVPVEDDSEAPLANEEIVAQLVSMGFNQIHCQKAAINTSNSGVEEAMTWLLSHMDDPDIDAPISKGSGSESVDQSKVDTLISFGFQDDVARKALKASGGDIEKATDWIFSNPDASVSNMDATASSTTSGPNDADLPDGGGRYRLTGIVSHIGTSTHCGHYVAHILKDGRWVIFNDNKVGASINPPKDMGYLYFFERLDS 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04493 804 SUPERFAMILY UBA-like 672 718 IPR009060 GO:0005515
Tsu02g04493 804 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 804 - -
Tsu02g04493 804 Pfam Zn-finger in ubiquitin-hydrolases and other protein 180 253 IPR001607 GO:0008270
Tsu02g04493 804 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 747 765 IPR018200 GO:0004843|GO:0006511
Tsu02g04493 804 SMART Zf_UBP_1 179 234 IPR001607 GO:0008270
Tsu02g04493 804 CDD UBA2_atUBP14 680 717 - -
Tsu02g04493 804 CDD Peptidase_C19B 309 800 - -
Tsu02g04493 804 Pfam Ubiquitin carboxyl-terminal hydrolase 308 799 IPR001394 GO:0004843|GO:0016579
Tsu02g04493 804 Pfam Variant UBP zinc finger 11 73 IPR041432 -
Tsu02g04493 804 PIRSF UBP 3 803 IPR016652 GO:0004843|GO:0016579
Tsu02g04493 804 Gene3D Cysteine proteinases 301 803 - -
Tsu02g04493 804 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 108 IPR013083 -
Tsu02g04493 804 Pfam UBA/TS-N domain 678 713 IPR015940 -
Tsu02g04493 804 Pfam UBA/TS-N domain 619 655 IPR015940 -
Tsu02g04493 804 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 309 324 IPR018200 GO:0004843|GO:0006511
Tsu02g04493 804 SMART uba_6 678 715 IPR015940 -
Tsu02g04493 804 SMART uba_6 619 657 IPR015940 -
Tsu02g04493 804 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 676 716 IPR015940 -
Tsu02g04493 804 SUPERFAMILY RING/U-box 158 266 - -
Tsu02g04493 804 ProSiteProfiles Zinc finger UBP-type profile. 156 266 IPR001607 GO:0008270
Tsu02g04493 804 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 308 802 IPR028889 -
Tsu02g04493 804 Gene3D - 672 734 - -
Tsu02g04493 804 Gene3D - 613 671 - -
Tsu02g04493 804 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 804 - -
Tsu02g04493 804 SUPERFAMILY Cysteine proteinases 304 803 IPR038765 -
Tsu02g04493 804 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 253 IPR013083 -
Tsu02g04493 804 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 617 658 IPR015940 -
Tsu02g04493 804 CDD UBA1_atUBP14 619 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04493 Tsu-Chr2 53827696 53835991 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04493 K11836 - gmx:100805602 1391.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04493 02 53827696 53835991 Tsu02g04493 02 53827696 53835991 ECH