Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0327 ATGATAGAGCCCATGGACTTACTTCGATCGAATCTATCCCGAGTTCGGATTCCTGAGCCCACCAATCGCATTTACAAGCAAGAATGCTGCATTTCTTTCGACACTCCGAGGTCGGAAGGTGGACTGTTCGTCGACATGTACACTTTTCTTGCTTTTGGGAAGGATTATGTGAGTTGGAATTATGAGAAGACTGGCAATCCTGTTTATATGCATATAAAGCAGACAAAAAAACTAGATCCTGAAGACAGGCCTTCAAAGAAACCAACTCGTTTGGCTATAGGTGTTGATGGGGGATTTGATGACAACGAACCTGAATATGAAGAAACTCACAGTATAGTCATATTACCTGAATTTGTATCTCTACCATTCCCTTCAGTGGAATTGCCAGAAAAGGTAAGGTTGGCTGCTGATGCTATCTTACTGGCTGTGGGTGCTGAACGGAAAGAACAGATTACAGCTTGGACTGCTGATAAGAAAGAAGTTAGTACATATGCCATGAATTTACAGCAAATTGACAATGGTGTTGTTATTCCTCCATCTGGGTGGAAATGTTCTAAGTGTGACAAGACAGAAAATCTTTGGCTTAATCTGACTGATGGAATGATCCTTTGTGGGAGGAGGAACTGGGATGGAAGTGGCGGCAACAACCATGCTGTTGAGCACTACAAGGAGACAGGTTACCCTCTTGCTGTTAAGCTGGGGACCATCACTGCTGATCTGGAAGCAGCAGATGTTTTCTCCTATCCAGAGGATGATAGTGTCATTGACCCACATTTAGCACAGCATCTTGCATTTTTTGGGATTGACTTTTCTTCCCTTCAAAAGACTGAAATGACAACTGCTGAAAGAGAATTGGATCAAAATACCAACTTTGATTGGAATCGAATCCAAGAAAGTGGACAGGAAGTGGAACCAATTTTTGGACCTGGATATACAGGACTAGTCAATCTTGGAAATAGCTGTTACATGGCTGCTACTATGCAAGTTGTGTTTTCAACCCAATCCTTCTCTTTACGGTATTATAAGAATCAAAGCCTAAAGAAGGCATTCGATGCGGCTCCTGCCGATCCAACTGTTGACCTGAATATGCAATTGACAAAACTGGCTCATGGCTTACTATCTGGTAGATATTCTGTTCCGGCATCTGAGACTGATAAAAATGCAAATGCTGCTACTGCAACTACAACTGCTAAACAGGAAGGGATACCCCCACGTATGTTCAAATCTGTGATTGCTGCCAGCCATCCCGAGTTTTCATCTATGCGGCAACAGGATGCTTTGGAATTTTTCCTACATTTTCTTGACCAAGTTGAACGAGCTAATGCTGGGAAAACTGAACTGGATCCTGCAAGGAGTTTCAAGTTTGGTATTGAAGACCGAATCTTGTGTTCATCTGGAAAGGTTACCTATAATAGAAGGCATGACTATATTCTTTCTCTTAATATCCCTTTGCATGAAGCAACTAATAAAGAAGAATTAGAATCCTTTCAGAGACTGAAGGCAGAGAAACTTGCTGAAGGAAAGAACCTGTCTGGCGATGAGATTGTGCGTCCAAGGGTTCCTTTAGAAGCTTGCCTTGCAAACTACTCAGCGCCTGAGGAGATACACGATTTTTATAGCACTGCCTTGAAAGGAAAGACAACAGCAGTGAAGACGGCAGGTCTGACATCATTCCCTGATTACCTAGTGTTGCACATGAGGAAATTCATTATGGAGGCGGGCTGGGTTCCCAAAAAGCTTGATGTGTATATAGATGTTCCTGATATCATAGATATCAGTCATATGCGCAGCAAAGGTCATCAGGCTGGGGAAGAGCTGTTACCAGAAGAGGTACCTGGTGAGGATGACTCGAATAAACTTTTTGCCAATGAAGAAATTGTTTCACAGCTGGTGGCCATGGGTTTTAACCATCTTCATTGTCAGAAAGCTGCTATAAGTACCTCAAATGTTGGAGTAGAAGAGGCAATGAATTGGTTACTATCTCACATGGATGACCCAGATATTGACATTCCTATTTCCAAAGAAGGGCATGTCTCTGAAAATATGTCAAGCGTTGACCAAACAAAAGTTGatactttaatttcatttggATTTGAAGAAGAAGTTGCTCGCAAGGCGCTAAAAGCTTCCGGTGGTGACATTGAGAAAGCAACGGAATGGATATTTAGCAATCCTGATGCCTCTATTACCAGTATGGATGCTACATCATCAAACATCACATCCACCCCCGATGATGCCAGTCTTCCTGATGGAGGAGGGAGATATCGACTTATGGGAATTGTTAGCCACATTGGAACCTCTACCCAGTGTGGTCACTATGTTGCTCACATTTTTAAAGATGGTAGATGGGTTATTTTCAACGACAGCAAGGTTGGGGCTTCCATTAATCCTCCCAAGGACATGGGCTATCTATATTTCTTCGAGAGGCTTAATTCTTAA 2439 0.4227 MIEPMDLLRSNLSRVRIPEPTNRIYKQECCISFDTPRSEGGLFVDMYTFLAFGKDYVSWNYEKTGNPVYMHIKQTKKLDPEDRPSKKPTRLAIGVDGGFDDNEPEYEETHSIVILPEFVSLPFPSVELPEKVRLAADAILLAVGAERKEQITAWTADKKEVSTYAMNLQQIDNGVVIPPSGWKCSKCDKTENLWLNLTDGMILCGRRNWDGSGGNNHAVEHYKETGYPLAVKLGTITADLEAADVFSYPEDDSVIDPHLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQEVEPIFGPGYTGLVNLGNSCYMAATMQVVFSTQSFSLRYYKNQSLKKAFDAAPADPTVDLNMQLTKLAHGLLSGRYSVPASETDKNANAATATTTAKQEGIPPRMFKSVIAASHPEFSSMRQQDALEFFLHFLDQVERANAGKTELDPARSFKFGIEDRILCSSGKVTYNRRHDYILSLNIPLHEATNKEELESFQRLKAEKLAEGKNLSGDEIVRPRVPLEACLANYSAPEEIHDFYSTALKGKTTAVKTAGLTSFPDYLVLHMRKFIMEAGWVPKKLDVYIDVPDIIDISHMRSKGHQAGEELLPEEVPGEDDSNKLFANEEIVSQLVAMGFNHLHCQKAAISTSNVGVEEAMNWLLSHMDDPDIDIPISKEGHVSENMSSVDQTKVDTLISFGFEEEVARKALKASGGDIEKATEWIFSNPDASITSMDATSSNITSTPDDASLPDGGGRYRLMGIVSHIGTSTQCGHYVAHIFKDGRWVIFNDSKVGASINPPKDMGYLYFFERLNS 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0327 812 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 684 724 IPR015940 -
Sto7g0327 812 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 14 812 - -
Sto7g0327 812 SUPERFAMILY RING/U-box 162 270 - -
Sto7g0327 812 Pfam Zn-finger in ubiquitin-hydrolases and other protein 184 258 IPR001607 GO:0008270
Sto7g0327 812 SUPERFAMILY UBA-like 679 726 IPR009060 GO:0005515
Sto7g0327 812 Gene3D Cysteine proteinases 305 811 - -
Sto7g0327 812 SMART uba_6 686 723 IPR015940 -
Sto7g0327 812 SMART uba_6 623 661 IPR015940 -
Sto7g0327 812 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 755 773 IPR018200 GO:0004843|GO:0006511
Sto7g0327 812 CDD Peptidase_C19B 313 808 - -
Sto7g0327 812 CDD UBA2_atUBP14 690 725 - -
Sto7g0327 812 CDD UBA1_atUBP14 623 667 - -
Sto7g0327 812 Pfam UBA/TS-N domain 623 659 IPR015940 -
Sto7g0327 812 Pfam UBA/TS-N domain 686 721 IPR015940 -
Sto7g0327 812 SMART Zf_UBP_1 183 238 IPR001607 GO:0008270
Sto7g0327 812 ProSiteProfiles Zinc finger UBP-type profile. 160 270 IPR001607 GO:0008270
Sto7g0327 812 Gene3D - 679 739 - -
Sto7g0327 812 Pfam Ubiquitin carboxyl-terminal hydrolase 312 807 IPR001394 GO:0004843|GO:0016579
Sto7g0327 812 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 312 810 IPR028889 -
Sto7g0327 812 SUPERFAMILY Cysteine proteinases 308 810 IPR038765 -
Sto7g0327 812 Pfam Variant UBP zinc finger 15 77 IPR041432 -
Sto7g0327 812 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 14 812 - -
Sto7g0327 812 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 621 662 IPR015940 -
Sto7g0327 812 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 313 328 IPR018200 GO:0004843|GO:0006511
Sto7g0327 812 Gene3D - 603 677 - -
Sto7g0327 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 257 IPR013083 -
Sto7g0327 812 PIRSF UBP 5 811 IPR016652 GO:0004843|GO:0016579
Sto7g0327 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 110 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0327 Sto-Chr7 2308583 2316927 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0327 K11836 - gmx:100805602 1405.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0327 7 2308583 2316927 Sto7g0327 7 2308583 2316927 ECH