Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0376 ATGTTGGACCCCATGGACCTCCTTCGATCCAACCTCTCTCGTGTCCGAATTCCTGAGCCCACTAATCGCATCTACAAGCAAGAATGCTGCGTTTCGTTTGCTACTCCGAAATCCGAAGGTGGATTGTTCATTGACATGAGTACGTTTCTTGCGTTTGGGAAGGACTGTGTGGACTGGAACTATGAGAAGACTGGAAATCCTGTTTATTTGCATATAAAGCAGACCAAGAAATTAGTTCCTGAAGATCGGCCTTTGAAGAAACCGACACTTTTGGCTATAGGTGTTGACGGGGGATTTGACAATAATGAACCTGAATATGAAGAAGCTCATAATATAGTCATATTGCCTAGTTACGTATCTCTTCCATTTCCATCTGTGGAGTTGCCGGAGAAGGTAAGGTTGGCAGTTGATGCCATCTTAATGGCTGAGGGTGCTGAGAGAAAAGAGCAACTTGCCTTGTGGACAGCTGATAAGAAGGAAATCAGTGCTTATGCCATGAGTCTGCAGCAGATTGACAATGGTGTCATTATTCCTCGATCAGGGTGGAAATGTTCCAAGTGTGATAAAACTGAGAATCTTTGGTTAAATTTGACTGATGGAATGATCCTTTGTGGGAGGAAAAATTGGGATGGAACTGGTGGCAACAACCATGCCATTGAGCATTACAAGGAGACAGGCTACCCTCTTGCTGTGAAGCTTGGTACGATAACTGCTGATCTGGAAGGAGCAGATGTTTTCTCTTATCCGGAGGATGATAGTGTTTTGGACCCCCTTCTAGCACAGCATTTGGCATTTTTTGGTATTGATTTTTCATCATTACAGAAGACTGAAATGACTACTGCTGAAAGGGAACTTGACCAGAATACCAATTTTGATTGGAACCGAATTCAAGAAAGTGGACAAGAAGTTGAACCACTATTTGGACCTGGCTATACAGGACTTGTCAATCTTGGAAACAGTTGTTACTTGGCATCAACCATGCAAGTTGTGTTCTCAACACAGTCCTTCCATTCACGATATTACTTGAGCCAAAGTTTGAAAGCAGCTTTTGAGACTGCTCCTGCTGATCCAACTGTAGATCTGAACATGCAATTGACAAAATTGGCTCATGGTATGCTATCTGGTAAATACTCATTTCCAGCATCAGAGAAAATTGATATTGCAAATGCTGCAGCCCCCATGTCAAGTTCTAAACAAGAAGGCATACCCCCTCGTATGTTCAAGGCAGTTATTGCTGCCAGCCATCCTGAATTTTCTAGTATGAGACAGCAGGATGCCTTAGAATTCTTTCTGCATTTGCTTGACCAAGTTGAACGAGTTAATGCTGGGCACCCTGAATTGGATCCCTCAAGGAGCTTCAAGTTTGGTATTGAGGAGCGACTTTTTTGTCCATCCGGAAAGGTTGCTTATAATAGAAGGGGGGATTATATTCTTTCTCTAAATATTCCACTGCATGAAGCTACTAATAAAGATCAGCTAGAAGCCTTTAACAAACTGAAGGCAGAAAAGAAAGCAGAGGGGAAAGAAGTATCTGGTGATGAAATCGTTCGTCCAAGGGTGCCTCTTGAAGCTTGCCTAGCAAGCTTTTCAGCTCCAGAGGAGGTTCATGGTTTTTACAGCACTGCCTTGAAGACTAAAACAACCGCAGTCAAGACTGCTGGTCTAACTTCATTTCCTGATTATTTGGTGTTGCACATGCGGAAATTTGTTATGGAGGAAGGCTGGGTGCCAAAAAAGCTTGATGTCTACATAGATGTTCCTGATATCATTGATATTAGTCACATGCGTAGCAGGGGCATTCAGCCTGGGGAAGAGCTATTACCAGAGGCTGTTGATGAGGGTAAGGTGGAGTCAGAAAAGCTCTTGGCCAATGAGGAGATAGTTGCTCAACTTGTGTCAATGGGATTTAACCATCTTCATTGCCAGAAAGCTGCTATTAACACGTCTAATGCTGGAGTGGAAGAGGCGATGAATTGGTTGCTATCACACATGGATGATCCAGATATAGATTTTCCCATTTCTCAAGAGGCAGAAAATGCTGAGGCCTTGTCATTTGTGGACCAATCAAAAGTTGATACTCTGATTTCATTTGGTTTTCAGGAAGACATTTCTCGGAGGGCATTGAGAGCATCGGGTGGTGATATTGAGAAAGCAACTGATTGGATATTTAGCAATCCTGATGCTGCTAGTTCATCAGATATGGATGCTACAACAAGCAGTACTCCTACTGCTGATGCTGGATTGCCTGATGGAGGAGGAAGATACCGACTTATTGGGCTAGTGAGCCACATTGGAACCTCAACCCAGTGTGGTCACTATGTTGCTCATATATACAAGGATGGAAGGTGGGTTATTTTCAACGATGACAAGGTTGGGGCTTCTATTAATCCCCCCAAGGATATGGGATATTTATATTTCTTTGAGAGACTGAGCAGTTGA 2439 0.4313 MLDPMDLLRSNLSRVRIPEPTNRIYKQECCVSFATPKSEGGLFIDMSTFLAFGKDCVDWNYEKTGNPVYLHIKQTKKLVPEDRPLKKPTLLAIGVDGGFDNNEPEYEEAHNIVILPSYVSLPFPSVELPEKVRLAVDAILMAEGAERKEQLALWTADKKEISAYAMSLQQIDNGVIIPRSGWKCSKCDKTENLWLNLTDGMILCGRKNWDGTGGNNHAIEHYKETGYPLAVKLGTITADLEGADVFSYPEDDSVLDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQEVEPLFGPGYTGLVNLGNSCYLASTMQVVFSTQSFHSRYYLSQSLKAAFETAPADPTVDLNMQLTKLAHGMLSGKYSFPASEKIDIANAAAPMSSSKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHLLDQVERVNAGHPELDPSRSFKFGIEERLFCPSGKVAYNRRGDYILSLNIPLHEATNKDQLEAFNKLKAEKKAEGKEVSGDEIVRPRVPLEACLASFSAPEEVHGFYSTALKTKTTAVKTAGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDIIDISHMRSRGIQPGEELLPEAVDEGKVESEKLLANEEIVAQLVSMGFNHLHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDFPISQEAENAEALSFVDQSKVDTLISFGFQEDISRRALRASGGDIEKATDWIFSNPDAASSSDMDATTSSTPTADAGLPDGGGRYRLIGLVSHIGTSTQCGHYVAHIYKDGRWVIFNDDKVGASINPPKDMGYLYFFERLSS* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0376 812 Gene3D Cysteine proteinases 305 631 - -
Vvi19g0376 812 Pfam Zn-finger in ubiquitin-hydrolases and other protein 184 257 IPR001607 GO:0008270
Vvi19g0376 812 SUPERFAMILY RING/U-box 163 270 - -
Vvi19g0376 812 ProSiteProfiles Zinc finger UBP-type profile. 160 270 IPR001607 GO:0008270
Vvi19g0376 812 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 142 809 - -
Vvi19g0376 812 FunFam Ubiquitin carboxyl-terminal hydrolase 5 102 - -
Vvi19g0376 812 SMART uba_6 624 662 IPR015940 -
Vvi19g0376 812 SMART uba_6 687 724 IPR015940 -
Vvi19g0376 812 SUPERFAMILY Cysteine proteinases 308 810 IPR038765 -
Vvi19g0376 812 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 313 328 IPR018200 GO:0004843|GO:0006511
Vvi19g0376 812 FunFam Ubiquitin carboxyl-terminal hydrolase 664 730 - -
Vvi19g0376 812 SMART Zf_UBP_1 183 238 IPR001607 GO:0008270
Vvi19g0376 812 Gene3D - 682 743 - -
Vvi19g0376 812 FunFam Ubiquitin carboxyl-terminal hydrolase 148 257 - -
Vvi19g0376 812 Gene3D - 632 666 - -
Vvi19g0376 812 FunFam Ubiquitin carboxyl-terminal hydrolase 622 663 - -
Vvi19g0376 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 108 IPR013083 -
Vvi19g0376 812 SUPERFAMILY UBA-like 676 728 IPR009060 GO:0005515
Vvi19g0376 812 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 312 810 IPR028889 -
Vvi19g0376 812 FunFam Ubiquitin carboxyl-terminal hydrolase 305 645 - -
Vvi19g0376 812 PIRSF UBP 6 811 IPR016652 GO:0004843|GO:0016579
Vvi19g0376 812 CDD UBA2_atUBP14 689 726 - -
Vvi19g0376 812 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 685 725 IPR015940 -
Vvi19g0376 812 Pfam Ubiquitin carboxyl-terminal hydrolase 312 807 IPR001394 GO:0004843|GO:0016579
Vvi19g0376 812 CDD UBA1_atUBP14 624 668 - -
Vvi19g0376 812 Pfam Variant UBP zinc finger 15 77 IPR041432 -
Vvi19g0376 812 CDD Peptidase_C19B 313 808 - -
Vvi19g0376 812 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 755 773 IPR018200 GO:0004843|GO:0006511
Vvi19g0376 812 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 622 663 IPR015940 -
Vvi19g0376 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 257 IPR013083 -
Vvi19g0376 812 Pfam UBA/TS-N domain 687 722 IPR015940 -
Vvi19g0376 812 Pfam UBA/TS-N domain 624 660 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0376 Vvi-Chr19 4111005 4154980 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0376 K11836 - vvi:100264052 1598.18