Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01349 ATGACCATCCAACCCTTGGATTTGCTCCGCTCCAATCTCTCCCGGGTTCGGATCCCCGAACCCACCAATCGCATCTACAAGCACGAATGCTGCGTTTCGTTCGACTCTCCGAGGTCGGAAGGTGGTTTGTTCGTCGACATGTGTACTTTTCTTGCTTTCGGGAAGGATTTTGTTGGTTGGAATTATGAGAAGACTGGAAATCCTGTCTATTTGCATATAAAGCAGACAAATAAATTAGTTCCAGAAGACCGGCCTTCAAAGAAACCTACTCTCTTGGCTATAGGTGTTGATGGGGGATTTGATAACAATGAGCCAGAATATGAGGAAACTCATAGTGTAGTTATATTACCTGAGTATGTTTCTCTTCCATTCCCTTCTGTGGAATTGCCAGAGAAGGTAAGGTTGGCAGTTGATGCAATCTTACTAGCTGAGGGTGCTGAACGAAAGGAGCAACTTGCAGCATGGACTGCTGATAAGAAGAAAGTTAGTTCCTATGCAACAAATTTACAACAAATTGACAATGGTGTTGTTATTCCACCATCTGGGTGGAAATGTGCTAAATGTGACAAGACTGACAATCTTTGGCTAAACCTGACTGATGGAATGATTCTTTGTGGGAGGAAAATGTGGGGTGGAACTGGTGGAAACAACCATGCTGTTGAGCATTACCAAGAGACAGGCTTCCCTGTTGCTGTAAAGCTTGGAACTATCACTGCTGATCTTGAAGCAGCAGATGTTTACTCTTATCCAGATGATGAAAGTGTCTTGGATCCACAATTAGCGCAGCATCTGGCATTTTTTGGCATTGACTTTTCATCACTACGAAAGACTGAAATGACAACTGCTGAAAGAGAACTTGATCAAAATACGAATTTTGATTGGAATCGAATCCAAGAAAGTGGACAAGAAGTAGATCCAATTTTTGGACCTGGATATACAGGATTGGTCAATATTGGAAACAGTTGTTACATGGCAGCAACTATGCAAGTTGTGTTTTCAACAAGATCCTTCACATCACGGTACTATTTGAACCAAAGTCTAAAGAAGGCATTTGAGATGTCTCCTGCTGATCCCACTGTAGACCTAAATATGCAGTTAACAAAATTGGCTCACGGCATACTTTCTGGTAAATATTCTGTTCCGGCATTTGAGAATGATGAAAAAGAAAATGTTGCTACTTCAACTACAACTGCTAAACAAGAAGGGATACGTCCACATATGTTTAAATCTGTAATAGCTGCCAGCCATCCTGAATTTTCATCTCCGAGGCAACAGGATGCTTTAGAATTTTTCCTACATTTTCTTGATCAAGTTGAGCGAGCTAATGCTGGGAAAGTTGAACTGGATCCATCGACGAGTTTCAAATTTGGTATTGAAGATAGAATTTTGTGTTCATCTGGAAAAGTTACATATAATAGAAGGCATGACTACATTCTTTCTCTCAATATCCCATTACATGAGGCAACTAACAAAGAAGAATTAGAATCCTTTCACAAACTGAAAGCAGAGAAACTTGCAGAAGGAAAGGAAATAAATGCCAATGAGATTGTGCGTCCAAGGGTACCTTTAGAAACTTGCCTTGCGAATTTCTCAGCTCCTGAGGAGATACATGATTTTTACAGTACTGCTTTGAAGACAAAGACAACAGCACTGAAGACTGCAGGTCTGACCTCATTTCCTGATTACCTGGTGTTACATATGCGGAGATTTGTTATGGAGGCAGATTGGGTACCAAAAAAGCTTGATGTGTACATTGATGTTCCTGATATCATAGATATCAGTCACATGCGCAGCAAAGGTCAGCAGTCTGGGGAAGAGCTATTACCTGATGGTGTTCCTGAAGAGGAAGATTCAAACAAAATTTCGGCCAACGATGAAATTGTTGCCCAGCTGGTTTCCATGGGCTTTAACCATCTCCATTGTCAGAAAGCTGCTATAAATACATCCAATGTTGGAGTAGAAGAGGCAATGAATTGGTTGCTATCTCACATGGATGATCCAGACATTGACAATCCTATTTCCAAAGGCCATGGCTCTGAAACTGTTGACCAATCAAAAGTTGATATTCTAATTTCTTTTGGATTTGAAGAAGAAATTGCTAGGAAGGCTCTGAAGGCATCGGATGGTGACATTGAGAAAGCAACGGATTGGATATTTAACAATCTCGATGCATCAGTCTCCAGTATGAATGCTGCCCCATCAACCTCTGCATCCACTACCAATGATGTTAACCTACCCGATGGAGGAGGGAAATATCGACTTATGGGGATTGTGAGCCACAGTGGAACTTCTACGCAGTGTGGCCACTATGTTGCTCACATTTTAAAAGATGGTAGATGGGCAATTTTCAACGACAACAAGGTCGGGGCATCCATTGATCCTCCAAAGGAAATGGGCTATCTTTATTTCTTCGAAAGGCTTTGA 2424 0.4138 MTIQPLDLLRSNLSRVRIPEPTNRIYKHECCVSFDSPRSEGGLFVDMCTFLAFGKDFVGWNYEKTGNPVYLHIKQTNKLVPEDRPSKKPTLLAIGVDGGFDNNEPEYEETHSVVILPEYVSLPFPSVELPEKVRLAVDAILLAEGAERKEQLAAWTADKKKVSSYATNLQQIDNGVVIPPSGWKCAKCDKTDNLWLNLTDGMILCGRKMWGGTGGNNHAVEHYQETGFPVAVKLGTITADLEAADVYSYPDDESVLDPQLAQHLAFFGIDFSSLRKTEMTTAERELDQNTNFDWNRIQESGQEVDPIFGPGYTGLVNIGNSCYMAATMQVVFSTRSFTSRYYLNQSLKKAFEMSPADPTVDLNMQLTKLAHGILSGKYSVPAFENDEKENVATSTTTAKQEGIRPHMFKSVIAASHPEFSSPRQQDALEFFLHFLDQVERANAGKVELDPSTSFKFGIEDRILCSSGKVTYNRRHDYILSLNIPLHEATNKEELESFHKLKAEKLAEGKEINANEIVRPRVPLETCLANFSAPEEIHDFYSTALKTKTTALKTAGLTSFPDYLVLHMRRFVMEADWVPKKLDVYIDVPDIIDISHMRSKGQQSGEELLPDGVPEEEDSNKISANDEIVAQLVSMGFNHLHCQKAAINTSNVGVEEAMNWLLSHMDDPDIDNPISKGHGSETVDQSKVDILISFGFEEEIARKALKASDGDIEKATDWIFNNLDASVSSMNAAPSTSASTTNDVNLPDGGGKYRLMGIVSHSGTSTQCGHYVAHILKDGRWAIFNDNKVGASIDPPKEMGYLYFFERL 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01349 807 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 258 IPR013083 -
Gma12g01349 807 SUPERFAMILY RING/U-box 163 271 - -
Gma12g01349 807 SMART Zf_UBP_1 184 239 IPR001607 GO:0008270
Gma12g01349 807 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 681 721 IPR015940 -
Gma12g01349 807 SUPERFAMILY UBA-like 648 724 IPR009060 GO:0005515
Gma12g01349 807 Pfam Variant UBP zinc finger 16 78 IPR041432 -
Gma12g01349 807 Pfam Ubiquitin carboxyl-terminal hydrolase 313 804 IPR001394 GO:0004843|GO:0016579
Gma12g01349 807 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 807 - -
Gma12g01349 807 Pfam UBA/TS-N domain 683 718 IPR015940 -
Gma12g01349 807 Pfam UBA/TS-N domain 624 660 IPR015940 -
Gma12g01349 807 Gene3D - 677 737 - -
Gma12g01349 807 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 622 663 IPR015940 -
Gma12g01349 807 PIRSF UBP 8 807 IPR016652 GO:0004843|GO:0016579
Gma12g01349 807 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 314 329 IPR018200 GO:0004843|GO:0006511
Gma12g01349 807 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 807 - -
Gma12g01349 807 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 313 807 IPR028889 -
Gma12g01349 807 Pfam Zn-finger in ubiquitin-hydrolases and other protein 185 259 IPR001607 GO:0008270
Gma12g01349 807 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 112 IPR013083 -
Gma12g01349 807 SMART uba_6 624 662 IPR015940 -
Gma12g01349 807 SMART uba_6 683 720 IPR015940 -
Gma12g01349 807 CDD Peptidase_C19B 314 805 - -
Gma12g01349 807 Gene3D - 605 676 - -
Gma12g01349 807 SUPERFAMILY Cysteine proteinases 309 806 IPR038765 -
Gma12g01349 807 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 752 770 IPR018200 GO:0004843|GO:0006511
Gma12g01349 807 Gene3D Cysteine proteinases 306 807 - -
Gma12g01349 807 ProSiteProfiles Zinc finger UBP-type profile. 161 271 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01349 Gma-Chr12 20674701 20690414 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01349 K11836 - gmx:100805602 1611.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01349 12 20674701 20690414 Gma12g01349 12 20674701 20690414 ECH