Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02104 ATGGATTTGCTCCGATCAAATCTATCTCGGGTTCGGATTCCCGAACCCACCAATCGCGTCTACAAGCAAGAATGCTGCTTATCTTTCGACACTCCTATGTCAGAAGGTGGATTATTCATCGACATGTTCACATTTCTTGCTTTTGGGAAGGATTATGTTGGTTGGAATTTTGAAAAAACCGGTAATCCGGTTTACTTGCATGTGAAGAAGACTAAGAAGCTGATTCCAGAAGACAGGCCTTCAAAGAAACCTACTCTTTTGGCTATAGGTATCGATGGAGGATTTGATAACAATGAGTCTGAATATGAAGAAACTCATAATATAGTTATATTACCTGACTATGTTTCTCTTTCATTTCCTTCTGTGGAATTGCCAGAGAAGGTAAGGCTGGCTGCTGATGCTATATTGCTAGATGCGGGTGCTGAACGGAAGGAACAAGTTGCAGCTTGGACTGCTGATAAGAAACTCGTCAGTAGCTATGCAATGGATTTACAGCAAATTGACAATGGTGTTGTTATTCCTCCGTCTGGGTGGAAATGTTCTGAGTGTGACAAGACAGACAATCTTTGGTTAAATCTGACTGACGGAGTGATCCTCTGTGGGAGAAAAAATTGGGATGGAAGTGGTGGAAACAACCATGCCGTTGAACATTATAAAAAGACAGGCTACCCACTTGCTGTGAAGCTCGGGACTATCACTGCTGATCTGGAAGCAGCAGATGTTTTCTCCTATCCAGAAGATGAGAATGTCTTGGATCCACTTTTAGCACAGCATCTAGCATTTTTTGGCATTGATTTCTCATCACTGCAAAAGACTGAAATGACGACTGCTGAAAAAGAACTTGACCAAAATACCAATTTTGAATGGAATAGAATCCAAGAAAGTGGACGGGAAGTGGAACCAATTTTTGGACCTGGATATACAGGATTGGTCAATCTTGGAAACAGTTGTTACTTGGCAGCAACTATGCAAGTTGTATTTTCAGCAAGATCTTTCTCTTCAAGGTCTGTTCATGTCTCTAATTTTTATTTGAACTGTTCCGAACCCTGCTTGCAGTTACTTCAGTATTTGTTATGGTTGCATCTTAGGTACTATATAAGCCAAAGTCTAAAGAAGGCATTTGAGGCAGCTCCTGCGGATCCAACTGTGGACCTCAATATGCAGTTGACGAAATTGGCACATGGATTGCTATCTGGCAAATATTCTGTTCCACAATTTGAGAATGATGACAACACAAAAGTTGCAGCCACCCCTACATCTGCTGTGCAGGAAGGGATACCACCACGTATGTTCAAAGCTTTAGTTGCTGCGAGCCATCCGGAATTTTCATCTATGCGACAACAGGATGCTTTAGAATTTTTCCTTCATTTTCTTGACCAAGTGGAACGAGCTAATGCTGGGAAAACTGAATTGGATCCTTCAAGGAGTTTCAAGTTTGGTGTTGAAGATCGATTCCTGTGTTCATCTGGAAAAGTTGTATACAATAGAAGGCTTGACTACATTCTTTCTTTGAATATCCCATTGGATGAAGCAACTAACAAAGAAGAATTGGAATTGTTTCACAAACTGAAAGCAGAGAAACTTTCTGAAGGAAAAGAAGTGTCTGGTGAGGAGATTGTACGTCCAAGGGTGCCTTTAGAAGCTTGCCTCACAAACTTCTCAGCTCCCGAGGAGATACATGATTTTTACAGTACTTCCTTGCAGTCAAAGACAACAGCGGTGCTGACGTCTGGTCTGACATCATTCCCTGATTACCTGGTGTTGCACATGCGGAAATTTGTTATGGAAGAGGGATGGGTACCCAAAAAACTTGATGTACATGTTGACGTTCCTGATATCATAGATATCAGTCATATGCGTAGCAAAGGTCATCAACCTGGGGAAGAGCTTCTACCAGATCGGGTACCTGAAGAGGATGAGTCAGAAATACCTTTAGCCAATGAAGACATTGTTTCACAGCTGGTTTCTATGGGCTTTAACCATCTTCATTGTCAAAAAGCTGCTATAAATACATCAAATGTTGGAGTAGAAGAGGCAATGAATTGGTTACTATCTCACATGGATGATCCAGATATTGACGCGCCTATATCAAAAGGGGGTGGCTCTGAAAGTGTTGACCAGTCAAAAGTTGATACCCTAATTGCATTTGGATTTCAAGACGACGTTGCTCGAAAGGCACTGAAGGCATCGGGTGGTGACATAGAGAAAGCAACAGACTGGATCTTTAGCAATCCCGATGCATCCGTTTCTAGCATGGATGCTACTGCATCAAATACTACATCTGGTCCAAATGATGCTGACTTACCCGATGGAGGAGGAAAATATCGACTTATGGGAATTGTTAGCCACATTGGAACCTCAACACACTGTGGTCACTATGTTGCACACATCTTAAAAGATGGAAGATGGGTTATTTTTAACGACAACAAGGTAGGGGCTTCCATAAATCCTCCAAAGGACATGGGGTATCTTTACTTTTTCGAGAGGCCTCATTGGCTGCCTCAACATTTTTCGGGTTCGCATCCCTTTTAG 2532 0.4194 MDLLRSNLSRVRIPEPTNRVYKQECCLSFDTPMSEGGLFIDMFTFLAFGKDYVGWNFEKTGNPVYLHVKKTKKLIPEDRPSKKPTLLAIGIDGGFDNNESEYEETHNIVILPDYVSLSFPSVELPEKVRLAADAILLDAGAERKEQVAAWTADKKLVSSYAMDLQQIDNGVVIPPSGWKCSECDKTDNLWLNLTDGVILCGRKNWDGSGGNNHAVEHYKKTGYPLAVKLGTITADLEAADVFSYPEDENVLDPLLAQHLAFFGIDFSSLQKTEMTTAEKELDQNTNFEWNRIQESGREVEPIFGPGYTGLVNLGNSCYLAATMQVVFSARSFSSRSVHVSNFYLNCSEPCLQLLQYLLWLHLRYYISQSLKKAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPQFENDDNTKVAATPTSAVQEGIPPRMFKALVAASHPEFSSMRQQDALEFFLHFLDQVERANAGKTELDPSRSFKFGVEDRFLCSSGKVVYNRRLDYILSLNIPLDEATNKEELELFHKLKAEKLSEGKEVSGEEIVRPRVPLEACLTNFSAPEEIHDFYSTSLQSKTTAVLTSGLTSFPDYLVLHMRKFVMEEGWVPKKLDVHVDVPDIIDISHMRSKGHQPGEELLPDRVPEEDESEIPLANEDIVSQLVSMGFNHLHCQKAAINTSNVGVEEAMNWLLSHMDDPDIDAPISKGGGSESVDQSKVDTLIAFGFQDDVARKALKASGGDIEKATDWIFSNPDASVSSMDATASNTTSGPNDADLPDGGGKYRLMGIVSHIGTSTHCGHYVAHILKDGRWVIFNDNKVGASINPPKDMGYLYFFERPHWLPQHFSGSHPF 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02104 843 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 361 829 - -
Car01g02104 843 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 775 793 IPR018200 GO:0004843|GO:0006511
Car01g02104 843 Gene3D - 701 762 - -
Car01g02104 843 Pfam Ubiquitin carboxyl-terminal hydrolase 308 827 IPR001394 GO:0004843|GO:0016579
Car01g02104 843 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 339 - -
Car01g02104 843 SUPERFAMILY RING/U-box 158 266 - -
Car01g02104 843 SUPERFAMILY Cysteine proteinases 304 829 IPR038765 -
Car01g02104 843 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 704 744 IPR015940 -
Car01g02104 843 Gene3D Cysteine proteinases 301 830 - -
Car01g02104 843 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 308 830 IPR028889 -
Car01g02104 843 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 361 829 - -
Car01g02104 843 SMART uba_6 647 685 IPR015940 -
Car01g02104 843 SMART uba_6 706 743 IPR015940 -
Car01g02104 843 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 309 324 IPR018200 GO:0004843|GO:0006511
Car01g02104 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 253 IPR013083 -
Car01g02104 843 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 339 - -
Car01g02104 843 SMART Zf_UBP_1 179 234 IPR001607 GO:0008270
Car01g02104 843 Gene3D - 628 700 - -
Car01g02104 843 CDD UBA2_atUBP14 708 745 - -
Car01g02104 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 106 IPR013083 -
Car01g02104 843 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 637 686 IPR015940 -
Car01g02104 843 SUPERFAMILY UBA-like 677 744 IPR009060 GO:0005515
Car01g02104 843 Pfam Variant UBP zinc finger 11 73 IPR041432 -
Car01g02104 843 Pfam UBA/TS-N domain 647 683 IPR015940 -
Car01g02104 843 Pfam UBA/TS-N domain 706 741 IPR015940 -
Car01g02104 843 Pfam Zn-finger in ubiquitin-hydrolases and other protein 180 253 IPR001607 GO:0008270
Car01g02104 843 CDD Peptidase_C19B 309 828 - -
Car01g02104 843 PIRSF UBP 340 831 IPR016652 GO:0004843|GO:0016579
Car01g02104 843 PIRSF UBP 3 349 IPR016652 GO:0004843|GO:0016579
Car01g02104 843 ProSiteProfiles Zinc finger UBP-type profile. 156 266 IPR001607 GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02104 K11836 - gmx:100805602 1352.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02104 01 46487198 46495922 Car01g02104 01 46487198 46495922 ECH