Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2420 ATGATAACCGAACCCTTGGATTTGCTTCGTTGCAATCTCTCTCGTGTTCGGATCCCGGAACCTACCAATCGCATCTTCAAGCATGAATGCTGCGTTTCTTACAACACACCGAGGTCAGAAGGTGGGTTGTTCGTTGATTTGAACACTTTTCTTGCTTTCGGAAAGGATTATGTTGGTTGGAATTATGAGAAGACTGGAAATCCTGTCTATTTGCATATAAAGCAGACAAAGAAGTTTGTTCCAGAAGATAGGCCGTTAAAGAGACCGACTTTATTGGCTATAGGTCTTAATGGGGGATTTGACAACGATGAGCCTGAATATGAAGAAACTCACAGTATAGTTATACTACCTGAGTATGTGTCTCTTTCACTCCCTTCTGTGGAATTGCCAGAGAAGGTAAGGTTGGCAGTTGATGCAATCTTACTAGCCGACGGTGCTGAACGTAAGGAGCAACTTGCAGCTTGGGCGGCTGATGAGAAACAAGTTAGTGCCTATGCAGTTAATTTACAACAGATTGACAATGGCGTTGTTATTCCGCCATCTGGGTGGAAATGTGCTAAGTGTGATAAGAGGGACAATCTTTGGCTAAATCTAACTGATGGAATGATTCTTTGTGGGAGGAAAAACTGGGATGGAAGTGGTGGAAATAACCATGCTATTGAGCATTATGAACAGACAAGACACCCTCTTGCTGTAAAGCTTGGTACTATTACTGCTGATCTGGAAGCAGCAGATGTTTACTCTTATCCTGAGGATGACAGTGTCTTGGATCCACATTTAGCGCAACATTTGGCCTTTTTTGGCATTGACTTTTCATCGCTTCAAAAGACTGAAATGACGACTGCTGAAAGAGAACTTGACCAAAATACAAATTTTGATTGGAATCGAATCCAAGAAAGTGGACAAGAAGTTGATCCAATTTTTGGACCTGGTTATACAGGATTGGTCAACATTGGAAATAGTTGTTACATAGCAGCAACAATGCAAGTTGTGTTTTCAACCAGATCATTCATATCACGGTACTACTTGAACCAAAGTCTAAAAAAGGCATTTGAGTTGTCTCCTACTGATCCAACTGTAGACCTGAATATGCAGCTAACAAAATTGGCGCATGGTTTACTTTCTGGGAAATACTCTGTTCCGGCATTCAAGAATGATGAAAAAGAAAATTTGGCCACCTCAACTACGACCGCTAAACAAGAAGGAATACGGCCAAATATGTTCAAAGCTGTAATTGCTGCCAGCCATCCTGAATTTTCATCTATTCGGCAACAGGATGCTTTAGAATTTTTCTTACATTTTCTTGATCGAGTTGAACGGGCTAATGATGGGAAAACTGAACTGGAACCTGCGAGGAGTTTCAAGTTTGGTATTCAAGATAGAATTTCGTGTGCATCTGGAAAAGTTACATACAATAGAAGGCATGACTATATTCTTTCTCTCAATATCCCATTGCATGAAGCAACAAACAAAGAAGAATTAGAATCCTTTCACAAACTCAAAGCAGAGAAACTTGCAGAAGGAAAGGAACTATCTAGCGATGCGATTGTGCGTCCAAGGGTGCCTTTAGAAGCTTGCCTTGCAAACTTCTCTGCTCCTGAGGATATTCACGACTTTTACTGCACTGCTTTGAAAAGAAAGACAACAGCCCTGAAGACTGCAGGTTTGACCTCATTTCCTGATTACCTGGTGTTACACATGCGAAGATTTGTTATGGAGGCAGGATGGGTACCTAAAAAGCTTGATGTGTATGTTGATGTTCCTGATATCATAGATATCAGTCATATGCGCAGCAAAGGTCGCCAGGATGGTGAAGAACTGTTACCTGATGGGGATGAGGAAGACTCACAAAAACCATCGGCCAATGAAGAAATTGTCTCTCAACTTGTTTCCATGGGATTTAATCATCTCCATTGTCAGAAAGCTGCTATAAATACATCAAATGTTGGAGTGGAAGAGGCAATGAACTGGTTACTGTCTCACATTGATGATCCAGATATTGACATTCCTATTTCTGACGGCCATGGCTCTGAAGCTTTGACAACTCTTGACCAATCAAAAGTTGATCAGCTAATTATGTTTGGATTTCAAGAAGATCTTGCTCGAAAGGCTCTGAAAGCATCAGGTGGTGACATTGAGAAAGCAACAGATTGGATATTTAACAATCCTGAGGCATCAGTCTCCAGTATGGATACTGTCGCATCAGACACTGCATCCATTTCCGGTGACGTTGGCCTGCCTGATGGAGGAGGGAGATATCGACTTATTGGAGTTGTTAGCCACAGTGGAACCTCTACGCTGTGTGGTCACTACGTTGCTCACGCTTTTAAAGATGGTAGATGGGTTATTTTCAATGACAACAAGGTTGGGGCTTCGGTTAATCCTCCCAAGGAAATGGGTTATCTTTATTTCTTCGAGAGGCTTCATGATTGA 2433 0.4168 MITEPLDLLRCNLSRVRIPEPTNRIFKHECCVSYNTPRSEGGLFVDLNTFLAFGKDYVGWNYEKTGNPVYLHIKQTKKFVPEDRPLKRPTLLAIGLNGGFDNDEPEYEETHSIVILPEYVSLSLPSVELPEKVRLAVDAILLADGAERKEQLAAWAADEKQVSAYAVNLQQIDNGVVIPPSGWKCAKCDKRDNLWLNLTDGMILCGRKNWDGSGGNNHAIEHYEQTRHPLAVKLGTITADLEAADVYSYPEDDSVLDPHLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQEVDPIFGPGYTGLVNIGNSCYIAATMQVVFSTRSFISRYYLNQSLKKAFELSPTDPTVDLNMQLTKLAHGLLSGKYSVPAFKNDEKENLATSTTTAKQEGIRPNMFKAVIAASHPEFSSIRQQDALEFFLHFLDRVERANDGKTELEPARSFKFGIQDRISCASGKVTYNRRHDYILSLNIPLHEATNKEELESFHKLKAEKLAEGKELSSDAIVRPRVPLEACLANFSAPEDIHDFYCTALKRKTTALKTAGLTSFPDYLVLHMRRFVMEAGWVPKKLDVYVDVPDIIDISHMRSKGRQDGEELLPDGDEEDSQKPSANEEIVSQLVSMGFNHLHCQKAAINTSNVGVEEAMNWLLSHIDDPDIDIPISDGHGSEALTTLDQSKVDQLIMFGFQEDLARKALKASGGDIEKATDWIFNNPEASVSSMDTVASDTASISGDVGLPDGGGRYRLIGVVSHSGTSTLCGHYVAHAFKDGRWVIFNDNKVGASVNPPKEMGYLYFFERLHD* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2420 810 Gene3D - 605 674 - -
Mal5g2420 810 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 313 808 IPR028889 -
Mal5g2420 810 Pfam UBA/TS-N domain 684 719 IPR015940 -
Mal5g2420 810 Pfam UBA/TS-N domain 622 658 IPR015940 -
Mal5g2420 810 CDD Peptidase_C19B 314 806 - -
Mal5g2420 810 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 102 IPR013083 -
Mal5g2420 810 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 682 722 IPR015940 -
Mal5g2420 810 MobiDBLite consensus disorder prediction 601 620 - -
Mal5g2420 810 PIRSF UBP 8 809 IPR016652 GO:0004843|GO:0016579
Mal5g2420 810 Pfam Ubiquitin carboxyl-terminal hydrolase 313 805 IPR001394 GO:0004843|GO:0016579
Mal5g2420 810 Pfam Zn-finger in ubiquitin-hydrolases and other protein 185 259 IPR001607 GO:0008270
Mal5g2420 810 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 809 - -
Mal5g2420 810 ProSiteProfiles Zinc finger UBP-type profile. 161 271 IPR001607 GO:0008270
Mal5g2420 810 SUPERFAMILY Cysteine proteinases 309 808 IPR038765 -
Mal5g2420 810 SUPERFAMILY RING/U-box 163 271 - -
Mal5g2420 810 Pfam Variant UBP zinc finger 16 78 IPR041432 -
Mal5g2420 810 Gene3D Cysteine proteinases 306 809 - -
Mal5g2420 810 SMART uba_6 684 721 IPR015940 -
Mal5g2420 810 SMART uba_6 622 660 IPR015940 -
Mal5g2420 810 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 258 IPR013083 -
Mal5g2420 810 Gene3D - 675 728 - -
Mal5g2420 810 SMART Zf_UBP_1 184 239 IPR001607 GO:0008270
Mal5g2420 810 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 753 771 IPR018200 GO:0004843|GO:0006511
Mal5g2420 810 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 809 - -
Mal5g2420 810 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 314 329 IPR018200 GO:0004843|GO:0006511
Mal5g2420 810 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 620 661 IPR015940 -
Mal5g2420 810 SUPERFAMILY UBA-like 677 725 IPR009060 GO:0005515
Mal5g2420 810 CDD UBA1_atUBP14 622 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2420 Mal-Chr5 66220418 66245232 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2420 K11836 - gmx:100805602 1395.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g2420 5 66220418 66245232 Mal5g2420 5 66220418 66245232 ECH