Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3613 ATGGATTTACTCCGATCAAATCTTTCTCGTGTTCGAATTCCCGAACCAACCAATCGCATCTATAAGCAAGAATGTTGCTTATCTTTCGACACTCCTATTTCAGAAGGTGGATTGTTCATCGATATGTTTACTTTTCTTGCTTTTGGAAAGGATTATGTTGGTTGGAATTTTGAAAAGACTGGAAATCCTGTTTATTTGCATATAAAGAAGACTAAGAAATTGGTTCCTGAAGATAGACCTTCGAAGAAACCTACTCTATTGGCTATAGGTGTTGATGGGGGATTTGATAATAATGATGCTGAATATGAAGAAACACTTAATATAGTTATATTACCGGACTATGTTTCTCTTACGTTTCCTTCCGTGGAATTGCCGGAGAAGGTAAGGTTGGCAGTTGATGCTATATTGCTAGACGCTGGTGCTGAACGGAAGGAGCAAGTTGCAGCTTGGACTGCTGATAAGAAACTTGTCAGTACCTATGCAATGAGTTTACAGCAAATTGACAATGGTGTTGTTATTCCTCCATCTGGGTGGAAATGTTCTCAGTGTGACAAGACGGACAATCTTTGGTTAAATTTGACCGACGGAGTGATCCTCTGTGGGAGGAAAAATTGGGATGGAAGTGGCGGAAACAACCATGCTGTTGAACATTATAAAAAGACAAGCTACCCACTTGCCGTAAAGCTCGGTACTATTACTGCTGATCTGGAAGCAGCAGATGTTTACTCATATCCGGAGGATGATAATGTGTTAGATCCACTTTTAGCACAACATCTGGCATTTTTTGGCATTGATTTCTCCTCACTGCAGAAGACTGAAATGACAACTGCTGAAAAAGAACTCGACCAAAATACCAATTTTGAATGGAATAGAATCCAAGAAAGTGGACAGGAAGTGGAACCAATTTTTGGGCCTGGATACACAGGATTGGTCAATCTTGGAAACAGTTGCTACTTGGCAGCAACTATGCAAGCTGTATTTTCAGCACGATCTTTCTCTTCAAGGTACTATATAAACCAAAGTCTAAAGAAGGCATTTGAGGCTGCTCCTGCTGATCCAACTGTGGACCTCAATATGCAGATGACGAAATTGGCACATGGTTTACTATCTGGCAAATATTCTGTTCCACAATTTGAGGAAGGGATACCACCACGTATGTTTAAAGCTTTAGTTGCTGCCAGTCATCCGGAATTTTCATCTATGCGACAACAGGATGCTTTAGAATTTTTCCTTCATTTTCTGGACCAAGTGGAACGAGCTAATGCTGGGAAAACTGAACTGGATCCTGCAAGGAGTTTCAAGTTTGGCGTTGAAGATCGAATCTTGTGTTCATCTGGAAAAGTTGCGTACAATAGAAGGAATGACTACATTCTTTCTCTGAATATCCCGCTGCACCAAGCAACTAACAAAGAAGAGTTAGAATTGTTTCACAAACTAAAAGCAGAGAAACTTTCTGAAGGAAAAGAAGTGTCTAATGATGAGATTGTACGCCCAAGGGTGCCTTTAGAAGCTTGCCTAGCAAACTTCTCAGCTCCAGAGGAGATACATGATTTTTACAGCACTGCTTTGCAAACAAAGACAACAGCGCTGAAATCTGCTGGTCTGACATCATTTCCTGATTACCTGGTGTTGCACATGCGGAAATTCGTTATGGAAGAGGGATGGGTACCCAAAAAGCTTGATGTATATGTTGACGTTCCTGATATCATAGATATCAGTCATATGCGTAGCAAAGGTCATCAACCTGGGGAAGAGCTTCTACCAGATGGGGTACCTGTTGAGGATGATTCAGAAACACCTTTAGCCAATGAAGACATTGTTTCGCAGCTGGTTTCTATGGGATTTAACCAACTTCATTGTCAAAAAGCTGCTATAAATACATCAAATGCTGGAGTAGAAGAGGCAATGACTTGGTTACTATCTCACATGGATGATCCAGATATTGATGCTCCTATTTTGAAAGGGAGTGGCTCTGAAAGTGTTGACCAGTCAAAAGTTGATATGCTAATTTCATTTGGATTTCAAGACGACGTTGCTCGAAAGGCACTGAAGGCATCGGGTGGTGACATAGAGAAAGCAACAGACTGGATCTTTAGCAATCCTGATGCATCCGTTTCCAACATGGATGCTACTGCATCAAGCACTACATCTGGTCCAAATGATGCTGACTTACCCGATGGAGGAGGAAGATATCGACTAACGGGAATTGTTAGCCACATCGGAACCTCAACACACTGTGGTCACTATGTTGCACACATCTTAAAAGATGGTAGATGGGTTATTTTTAACGACAACAAGGTAGGAGCTTCCATTAATCCTCCCAAGGACATGGGCTATCTTTACTTTTTCGAGAGGCTCGACTCTTGA 2367 0.4136 MDLLRSNLSRVRIPEPTNRIYKQECCLSFDTPISEGGLFIDMFTFLAFGKDYVGWNFEKTGNPVYLHIKKTKKLVPEDRPSKKPTLLAIGVDGGFDNNDAEYEETLNIVILPDYVSLTFPSVELPEKVRLAVDAILLDAGAERKEQVAAWTADKKLVSTYAMSLQQIDNGVVIPPSGWKCSQCDKTDNLWLNLTDGVILCGRKNWDGSGGNNHAVEHYKKTSYPLAVKLGTITADLEAADVYSYPEDDNVLDPLLAQHLAFFGIDFSSLQKTEMTTAEKELDQNTNFEWNRIQESGQEVEPIFGPGYTGLVNLGNSCYLAATMQAVFSARSFSSRYYINQSLKKAFEAAPADPTVDLNMQMTKLAHGLLSGKYSVPQFEEGIPPRMFKALVAASHPEFSSMRQQDALEFFLHFLDQVERANAGKTELDPARSFKFGVEDRILCSSGKVAYNRRNDYILSLNIPLHQATNKEELELFHKLKAEKLSEGKEVSNDEIVRPRVPLEACLANFSAPEEIHDFYSTALQTKTTALKSAGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYVDVPDIIDISHMRSKGHQPGEELLPDGVPVEDDSETPLANEDIVSQLVSMGFNQLHCQKAAINTSNAGVEEAMTWLLSHMDDPDIDAPILKGSGSESVDQSKVDMLISFGFQDDVARKALKASGGDIEKATDWIFSNPDASVSNMDATASSTTSGPNDADLPDGGGRYRLTGIVSHIGTSTHCGHYVAHILKDGRWVIFNDNKVGASINPPKDMGYLYFFERLDS* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3613 788 PIRSF UBP 3 787 IPR016652 GO:0004843|GO:0016579
Tpr7g3613 788 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 253 IPR013083 -
Tpr7g3613 788 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 601 642 IPR015940 -
Tpr7g3613 788 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 731 749 IPR018200 GO:0004843|GO:0006511
Tpr7g3613 788 CDD UBA2_atUBP14 664 701 - -
Tpr7g3613 788 Pfam Variant UBP zinc finger 11 73 IPR041432 -
Tpr7g3613 788 Gene3D - 585 655 - -
Tpr7g3613 788 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 788 - -
Tpr7g3613 788 SMART Zf_UBP_1 179 234 IPR001607 GO:0008270
Tpr7g3613 788 SMART uba_6 603 641 IPR015940 -
Tpr7g3613 788 SMART uba_6 662 699 IPR015940 -
Tpr7g3613 788 Pfam Zn-finger in ubiquitin-hydrolases and other protein 180 253 IPR001607 GO:0008270
Tpr7g3613 788 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 660 700 IPR015940 -
Tpr7g3613 788 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 309 324 IPR018200 GO:0004843|GO:0006511
Tpr7g3613 788 Gene3D Cysteine proteinases 301 787 - -
Tpr7g3613 788 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 308 786 IPR028889 -
Tpr7g3613 788 SUPERFAMILY Cysteine proteinases 304 787 IPR038765 -
Tpr7g3613 788 Pfam UBA/TS-N domain 603 639 IPR015940 -
Tpr7g3613 788 Pfam UBA/TS-N domain 662 697 IPR015940 -
Tpr7g3613 788 Gene3D - 656 718 - -
Tpr7g3613 788 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 108 IPR013083 -
Tpr7g3613 788 ProSiteProfiles Zinc finger UBP-type profile. 156 266 IPR001607 GO:0008270
Tpr7g3613 788 Pfam Ubiquitin carboxyl-terminal hydrolase 308 783 IPR001394 GO:0004843|GO:0016579
Tpr7g3613 788 CDD UBA1_atUBP14 603 647 - -
Tpr7g3613 788 CDD Peptidase_C19B 309 784 - -
Tpr7g3613 788 SUPERFAMILY UBA-like 642 702 IPR009060 GO:0005515
Tpr7g3613 788 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 788 - -
Tpr7g3613 788 SUPERFAMILY RING/U-box 158 266 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3613 K11836 - gmx:100805602 1358.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g3613 7 44744168 44752256 Tpr7g3613 7 44744168 44752256 ECH