Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0338 ATGGAGTTGCTCCGATCAAACCTTTCCCGGGTTCGAATCCCCGAGCCTACCAATCGCATATACAAGCAAGAATGCTGCGTGTCTTTCGACACTCCCGTGTCAGAAGGTGGATTGTTCATCGACATGTTCACTTTTCTCGCGTTTGGGAAGGACTTCGTGAGTTGGAATTTCGAGAAAACTGGAAATCCTGTTTACTTGCATGTGAAGAAGACTAAGAAGTTGGTTCCAGAAGATAGGCCTTCGAAGAAACCCACTCTCCTGGCTATAGGTGTTGATGGGGGATTTGATAACAATGAAGCTGAATATGAAGAGATTCATAGTATAGTTATATTACCTGATTATGTGTCTCTTCCGTTCCCTTCGGTGGAATTGCCGGAGAAGGTGAGGTTGGCTGCTGATGCTATTTTGTTAGCTGTTGGTGCTGAACGGAAGGAGCAAGTTGCAGCTTGGACTGCTGATAAGAAACGAGTTAGTGCCTATGCGATGAGTTTACAGCAGATTGACAATGGTGTTGTTATTCCTCCATCTGGGTGGAAATGTGCGGAGTGTGATAAGAAGGAGAATCTTTGGTTAAATCTGACTGATGGATTGATCCTTTGTGGGAGGAGAAATTGGGATGGAAGTGGTGGAAACAACCATGCTGTTGAACATTATAAAAAGACAGGCTACCCTCTTGCTGTAAAGCTTGGGACTATCACTGCTGATCTGGAAGCAGCAGATGTTTTCTCCTATCCAGAGGATGACAGTGTCTTGGACCCACTTTTAGCACAGCATCTGGCTTTTTTTGGCATTGATTTCTCATCACTGCAAAAGACTGAAATGACGACTGCTGAAAGAGAACTTGACCACAATACCAATTTTGAATGGAATCGAATCCAAGAAAGTGGACAGGCCGTGGAACCAATTTTTGGACCTGGATATACAGGATTGGTCAACCTTGGAAACAGTTGTTACTTGGCAGCAACAATGCAAGTTGTATTTTCTACACAATCCTTCTGTTCACGGTACTATATAAACCAAAATCTAAAAAAGGCATTTGAAACAGCTCCTGCTGATCCAACTGTGGACCTGAATATGCAGCTGACCAAATTGGCTCATGGTTTACTGTCTGGTAAATACTCTATTCCACCATCTGAGAGTGATGACTATGCAAATGTTGCTACCACATCTACAACTTTGGAACAGGAAGGGATACCCCCACGAATGTTCAAAGCTGTAATTGCTGCCAGCCATCCTGAATTTTCATCTATGCGGCAACAGGATGCTTTAGAATTTTTCCTTCACTTTCTTGACCAAGTTGAACGAGCTAATACTGGGAAAACTGAACTGGATCCTGCGAGGAGTTTCAAGTTTGGTATTGAAGATCGAATCTTGTGTTCATCGGGAAAAGTTGCGTATAATAAAAGACTTGACTATATTCTTTCGCTGAATATCCCATTGCATGAAGCAACTAACAAAGAAGAATTAGAATTGTTCAACAAACTGAAAGCAGAGAAACTTTCTGAAGGAAAGGAAGTGTCTGGCAATGAGATTGTACGGCCGAGGGTGCCTTTAGAAGCTTGCCTTGCAAATTTCTCATCCCCTGAGGAGATACATGATTTTTACAGCACTGCCTTGAAAGCAAAGACAATAGCAATGAAGACAGCTGGTCTGACATCTTTCCCTGATTACCTGGTGTTACACATGCGGAAATTTGTTATGGAGGAGGGATGGGTACCCAAAAAACTTGATGTGTATATAGATGTACCTGATATCATAGATATTAATCATATGCGCAGCAAAGGTCATCACCCTGGGGAAGAGCTTTTACCAGATGGGGTACCCGGTGAGGAGGATTCAGACGAACCTTTGGCCAATGAAGACATTGTCTCACAGCTGGTTTCCATGGGCTTTAACCATATTCATTGTCAGAAAGCTGCTATAAATACATCAAATGCTGGGGTAGAAGAGGCAATGAATTGGTTACTATCTCATATGGACGATCCAGATATTGACATTCCTATCTCAAAAGGGCAAGGCTGTGACAGTGTTGACCAATCAAAAGTTGATACTCTAATTTCATTTGGATTTCAAGATGATGTTGCTCGAAAGGCACTGAAGGCATCGGGTGGTGACATTGAGAAAGCAACAGAGTGGATATTTAGCAATCCTGATGCTTCAATTTCCAGTATGGATGCTACTGCATCAAACTCTGAATCTGTTCCAAATGATGCCAACTTACCTGATGGAGGAGGAAGATATCGACTAAAGGGTTTTGTTAGCCACATTGGAACATCGACGCTGTGTGGTCACTATGTTGCACATGTCTTAAAAGACGGTAGATGGGTTATTTTTAACGACAATAAAGTTGGGGCTTCCATTGATCCTCCCAAGGACATGGGCTATCTTTATTTCTTCGAGAGGCTTGATGTTTGA 2415 0.4253 MELLRSNLSRVRIPEPTNRIYKQECCVSFDTPVSEGGLFIDMFTFLAFGKDFVSWNFEKTGNPVYLHVKKTKKLVPEDRPSKKPTLLAIGVDGGFDNNEAEYEEIHSIVILPDYVSLPFPSVELPEKVRLAADAILLAVGAERKEQVAAWTADKKRVSAYAMSLQQIDNGVVIPPSGWKCAECDKKENLWLNLTDGLILCGRRNWDGSGGNNHAVEHYKKTGYPLAVKLGTITADLEAADVFSYPEDDSVLDPLLAQHLAFFGIDFSSLQKTEMTTAERELDHNTNFEWNRIQESGQAVEPIFGPGYTGLVNLGNSCYLAATMQVVFSTQSFCSRYYINQNLKKAFETAPADPTVDLNMQLTKLAHGLLSGKYSIPPSESDDYANVATTSTTLEQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFLDQVERANTGKTELDPARSFKFGIEDRILCSSGKVAYNKRLDYILSLNIPLHEATNKEELELFNKLKAEKLSEGKEVSGNEIVRPRVPLEACLANFSSPEEIHDFYSTALKAKTIAMKTAGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDIIDINHMRSKGHHPGEELLPDGVPGEEDSDEPLANEDIVSQLVSMGFNHIHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDIPISKGQGCDSVDQSKVDTLISFGFQDDVARKALKASGGDIEKATEWIFSNPDASISSMDATASNSESVPNDANLPDGGGRYRLKGFVSHIGTSTLCGHYVAHVLKDGRWVIFNDNKVGASIDPPKDMGYLYFFERLDV* 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0338 804 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 308 802 IPR028889 -
Apr2g0338 804 Gene3D - 673 732 - -
Apr2g0338 804 SUPERFAMILY RING/U-box 159 266 - -
Apr2g0338 804 SMART uba_6 619 657 IPR015940 -
Apr2g0338 804 SMART uba_6 678 715 IPR015940 -
Apr2g0338 804 CDD UBA2_atUBP14 680 717 - -
Apr2g0338 804 CDD Peptidase_C19B 309 800 - -
Apr2g0338 804 Pfam UBA/TS-N domain 619 655 IPR015940 -
Apr2g0338 804 Pfam UBA/TS-N domain 678 713 IPR015940 -
Apr2g0338 804 SMART Zf_UBP_1 179 234 IPR001607 GO:0008270
Apr2g0338 804 PIRSF UBP 2 803 IPR016652 GO:0004843|GO:0016579
Apr2g0338 804 Pfam Ubiquitin carboxyl-terminal hydrolase 308 799 IPR001394 GO:0004843|GO:0016579
Apr2g0338 804 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 309 324 IPR018200 GO:0004843|GO:0006511
Apr2g0338 804 Gene3D Cysteine proteinases 301 803 - -
Apr2g0338 804 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 803 - -
Apr2g0338 804 Gene3D - 606 672 - -
Apr2g0338 804 ProSiteProfiles Zinc finger UBP-type profile. 156 266 IPR001607 GO:0008270
Apr2g0338 804 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 109 IPR013083 -
Apr2g0338 804 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 747 765 IPR018200 GO:0004843|GO:0006511
Apr2g0338 804 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 676 716 IPR015940 -
Apr2g0338 804 SUPERFAMILY UBA-like 666 718 IPR009060 GO:0005515
Apr2g0338 804 Pfam Variant UBP zinc finger 11 73 IPR041432 -
Apr2g0338 804 MobiDBLite consensus disorder prediction 593 614 - -
Apr2g0338 804 SUPERFAMILY Cysteine proteinases 304 803 IPR038765 -
Apr2g0338 804 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 617 658 IPR015940 -
Apr2g0338 804 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 803 - -
Apr2g0338 804 Pfam Zn-finger in ubiquitin-hydrolases and other protein 180 253 IPR001607 GO:0008270
Apr2g0338 804 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 253 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0338 Apr-Chr2 4064800 4072409 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0338 K11836 - gmx:100805602 1384.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0338 2 4064800 4072409 Apr2g0338 2 4064800 4072409 ECH