Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01038 ATGATCCTAAAGCCCCATATCGTTGCCCTCGCCCTCCCTTCCAAATTCGCATTCCCTCACACCACCAAACCCTCCCTCACCACTTGCCTCATCCCACACTTCTCCGCTACCCCTCTCTCCTACGGACCCTCCCTCCGCAAGGGCACCGCCCCCTCCCAACCCCCTCCCAACCAAAACGACGCCGTCCTCCGCGAAGAAGCCTTCACCCGAGTCTTCCTCCTCGCCGCGCTCCGCGTCCCCGCCGCCGAATGCTCCGCCCTCGAAGCCCGCCTCCGCGGCCACCTCCTCAACTGGCCCCGCGTCCGCAACATCGCCCGCGTCCCCGGCGACGACGTCCACCCCGACCTCGCCCCGCTCCTACCTCACCCAATTAGCGCCGACCAAGAGGAAGACGAAAGCCGTCTCGTCGCGCTTCAACGCCGCATCCACGGCAAGGCGGACGCCGACGGCCACGTTCTGAGCCCCGTCCTGTACCGCGAGAGGCTCGCCAGGACGTTCAACTCGCGCGGGTTCGTGAAGTTCCGCCACCTCGCGAAGATTTCGCGGCCgaataggaataagaagaggaggaagaagaaggaggaggatgaagGCGTTAAGCGCGTTGGGGAGAACGGTTCGGCTGCGGTTGAGGTTGTTGAGGACGAGGACGAGGAAGAAGAAGAAGGTGGTTTGAGGAAGTTGCTGGGAGAAGAGTTTGCGAGGAGCAAGTGGAGAGGCTCCACGCGGTTGCTGCTTCTGGATGAACGCTACGCGAGTCGCGGCGTGGAGGAGTTGCCTGAGGCAATTAAGGCTGTTTTGAAGGAGTATGCAGAAAAGAGTACAACTTTGACCTTTGAGCTAGTTAGATGCAAGTTGACACTATTCTATAATTACTGGCAGATGACTGAGGTCTTGGAGGCCTTGCTGCCTGAGGGAATGATTGTTCCTTCAGCTTTTGAGACTGTTGGTCATATTGCCCACTTAAATTTGAGAGACGAACATTTACCATACAAGAGGCTAATAGCAAAGGTTGTGCTAGATAAAAATAAGCCAAGGATACAAACAGTTGTCAACAAGATTGATTCCATTCAAAATGAGTACAGGACAATGCAGCTTGAGGTTTTAGCAGGAAACCACTCCCTTGTGACTACAGTAGTTGAGAATGGAATTCGCTTTCAGGTTGACTTAGCAACAGTATATTGGAGTTCTAGGCTTGGAACTGAAAGGCAAAGGCTTCTGAGTGGTTTTACACAGAATGATGTTGTCTGTGATGTTTTCTCTGGAGTTGGTCCTCTAGCCATACCTGCAGCAAGGATAGTTAAGCGTGTTTTTGCTAATGACTTAAATCCTTATGCAGTTGAGTATTTGGAAAGAAATAGTGTTCTAAACAAACTCGAGAGGAAGATTAAGGTCTTTAACATGGATGGAAGAAGGTTCATTAAGGCTATGTATGCCAGTGATGTATCTCAGTCCATCACACAAGTGGTTATGAACTTGCCAAGTGAAGCTGCAGAATTTCTAGATGCATTTCGGGGAATATACAAAGATAGACCCGAGGGTGGGGAACTTACTTTGCCAATGATCCATGTTTATGGATTCTCCAAAGCGCGAGATCCAGAATTTGATTTTCACGAGAGAATAAGAATTGCGCTGTTAGAGGTAGCAGTCAACGTAGACATGCGACGGGTACGACTTGTTGCTCCTGGAAAATGGATGTTGTGCGCATCATTTATTCTCCCTAAAACTGTAGCATTTGCTAATACCGCACTTGATGCCTAA 1761 0.4991 MILKPHIVALALPSKFAFPHTTKPSLTTCLIPHFSATPLSYGPSLRKGTAPSQPPPNQNDAVLREEAFTRVFLLAALRVPAAECSALEARLRGHLLNWPRVRNIARVPGDDVHPDLAPLLPHPISADQEEDESRLVALQRRIHGKADADGHVLSPVLYRERLARTFNSRGFVKFRHLAKISRPNRNKKRRKKKEEDEGVKRVGENGSAAVEVVEDEDEEEEEGGLRKLLGEEFARSKWRGSTRLLLLDERYASRGVEELPEAIKAVLKEYAEKSTTLTFELVRCKLTLFYNYWQMTEVLEALLPEGMIVPSAFETVGHIAHLNLRDEHLPYKRLIAKVVLDKNKPRIQTVVNKIDSIQNEYRTMQLEVLAGNHSLVTTVVENGIRFQVDLATVYWSSRLGTERQRLLSGFTQNDVVCDVFSGVGPLAIPAARIVKRVFANDLNPYAVEYLERNSVLNKLERKIKVFNMDGRRFIKAMYASDVSQSITQVVMNLPSEAAEFLDAFRGIYKDRPEGGELTLPMIHVYGFSKARDPEFDFHERIRIALLEVAVNVDMRRVRLVAPGKWMLCASFILPKTVAFANTALDA 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01038 586 PANTHER TRNA METHYLTRANSFERASE 30 583 - -
Cca10g01038 586 Coils Coil 347 367 - -
Cca10g01038 586 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 309 575 IPR029063 -
Cca10g01038 586 PANTHER TRNA (GUANINE(37)-N1)-METHYLTRANSFERASE 2 30 583 - -
Cca10g01038 586 MobiDBLite consensus disorder prediction 183 206 - -
Cca10g01038 586 CDD AdoMet_MTases 416 517 - -
Cca10g01038 586 ProSiteProfiles SAM-dependent methyltransferase TRM5/TYW2-type domain profile. 313 575 IPR030382 -
Cca10g01038 586 Gene3D Vaccinia Virus protein VP39 376 573 IPR029063 -
Cca10g01038 586 Gene3D - 294 372 - -
Cca10g01038 586 Pfam Met-10+ like-protein 312 511 IPR030382 -
Cca10g01038 586 Hamap tRNA (guanine(37)-N1)-methyltransferase [TRMT5]. 60 575 IPR025792 GO:0009019|GO:0030488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01038 Cca-Chr10 12750113 12758759 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01038 K15429 - gmx:100793959 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01038 10 12750113 12758759 Cca10g01038 10 12750113 12758759 ECH