Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2924 ATGATGATAGACCCTATGGATTTGCTTCGATCAAATCTATCCCGGGTTCGGATCCCAGAACCCACCAACCGTATCTACAAGCAAGAATGCTGCTTAACTTTCGATACTCCGAGGTCAGAAGGTGGACTGTTCATtgatatgtacacttttcttgCTTTTGGGAAGGATGGTCTGGGTTGGAATTATGAGAAGACTGGAAATCCTGTGTATCTGCATATAAAGCAGACAAAGAAGATGATTCCTGAGGACAGGCCTTTAAAGAAACCAACTCTCTTGGCTATAGGTGTTGATGGAGGATTTGATAACAATGAACCTGCATATGAAGAAATGCACAGTATAGTAATATTGCCTGACCACGTATCTCTTCCATTTCCTTCAGTGGAATTACCAGAGAAGGTAAGGCTGGCTGCTGATGCCATCTTACTGGCTGAGGGTGCTGAACGCAAAGAGCAAGTTGCAGCTTGGACTGCTGATAAGAAACAAGTTAGTGCATATGCAGTAAATTTACAGCAGATTGACAATGGTGTTATTGTTCCTCCATCTGGGTGGAAATGCGTCAAGTGTGAGAAGACTGAAAACCTTTGGCTAAATTTGACTGATGGATTGATCCTTTGTGGGAGGAAAAACTGGGATGGAACTGGTGGCAACAACCATGCTATTGAACACTACAAGGAGACAGGCTACCCTCTTGCTGTAAAGCTTGGAACTATCACTGCTGATCTGGAAGCTGCAGGTAATGATTTCTTGCTCTCAGATGTTTTCTCCTATCCAGAGGATGACAGTGTCTTGGATCCACTTTTAGCACAGCATCTGGCATTTTTTGGCATTGACTTTTCATCACTTCAAAAGACAGAAATGACAACTGCTGAAAGGGAGCTTGACCAAAATACCAGTTTTGACTGGAATCGAATCCAAGAAAGTGGACAGGAAGTTGAACCAATTTATGGACCTGGATATACAGGACTTGTCAATCTTGGAAACAGCTGTTACTTGGCTGCAAGTATGCAAGTTGTGTTTTCAACTCTATCCTTTTCTTCAAGGTATTACACAAACCAAAGTCTAAGGAAGGCATTTGAGGCGGCACCTGCTGATGCAACTATAGACCTGAACATGCAATTGACAAAACTGGCACATGGTTTATTATCTGGAAAGTATTCTGTTCCAGCATTGGAGAATGATGAAAATGCAAATGTGGCTACGTCAACTATAACTGCTAAACAGGAAGGAATTCCCCCGCGTATGTTCAAAGCTGTAATTGCTGCTAGCCATCCTGAATTTTCATCTATGAGGCAACAGGATGCTTTAGAATTTTTCCTACATTTTCTTGATCAAGTTGAACGAGCTAATACTGGAAAATCTGAAGTGGATCCTGCCAGAAGTTTCAAGTTTGGTATTGAAGATAGAATCTTGTGTTCATCTGGAAAAGTTGCGTATAACAGAAGGCATGACTACATTCTTTCTCTTAATATACCATTGGATGAAGCAACTAATAAAGAAGAATTAGAAGCCTTTCAGAAACTGAAAGCCGAGAAACTTGTTGAAGGAAAGGAAGTGTGCGGTGATGAGATTGTACGACCTAGGGTGCCCTTAGAAGCTTGCCTTGCAAACTTCTCAGCTCCTGAAGAGATACATGATTTTTACAGCACTGCTTTGAAAGCAAAGACAACAGCAATGAAGATGGCAGGTCTAACTTCATTCCCAGATTACCTGGTGTTGCACATGCGGAAATTTGTTATGGAAGCGGGCTGGGTACCCAAAAAGCTTGATGTATATATAGACGTTCCAGATATCATAGATATTAGTCATATGCGCAGCAAAGGTCATCAGGCTGGGGAAGAGCTGTTACCAGATGGGGAAGAGGTGATTGGCCATCCTATCATCGTTCCCTACTTCCCTAGCTATAGCATGGATATGGCTATCTTTAGGTCTGAAAATAGTTCATACTCAGTTAAGCATAAAGTGatcaagaaaaggaaaagaccAAAAATACCTGGTGAGGAGGCTTCAATGAAACCTTCGGCCAATGAAGAAATTGTCTCACAGCTTGCCTCCATGGGCTTTAATTATCTTCATTGTCAGAAAGCTGCAATAAGTACCTTAAATGTTGGAGTAGAAGAGGCAATGAATTGGTTGCTATCTCACATGGATGATCCAGACATCGACAATCCGATTATCAATGAAGGGCTGAACTCTGAAAATTTATCAACTGTTGACCAATCAAAAGTTGATACCTTAATTTCATTTGGATTTCAAGAGGAAATTGCTCGAAAGGCATTGAAAGCATCGGGTGGTGACATAGAGAAAGCAACAGATTGGATATTTAGCAATCCTGATGCATCTGCTTCCAGTATGGATGCAACCTCATCTCACACATCTGTTCCAAACGATGCTGCCCTACCTGATGGAGGAGGAAAATATCGGCTTATTGGTATTGTTAGCCACATTGGAACCTCTACACAGTGTGGTCACTACGTTGCTCACATATTGAAAGATGGTAGATGGGTAATCTTTAACGACAATAAGGTTGGGGCTTCCATTAATCCTCCTAAAGACATGGGTTATCTTTATTTCTTCGAGAGACTTGCTTCATAG 2592 0.4101 MMIDPMDLLRSNLSRVRIPEPTNRIYKQECCLTFDTPRSEGGLFIDMYTFLAFGKDGLGWNYEKTGNPVYLHIKQTKKMIPEDRPLKKPTLLAIGVDGGFDNNEPAYEEMHSIVILPDHVSLPFPSVELPEKVRLAADAILLAEGAERKEQVAAWTADKKQVSAYAVNLQQIDNGVIVPPSGWKCVKCEKTENLWLNLTDGLILCGRKNWDGTGGNNHAIEHYKETGYPLAVKLGTITADLEAAGNDFLLSDVFSYPEDDSVLDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTSFDWNRIQESGQEVEPIYGPGYTGLVNLGNSCYLAASMQVVFSTLSFSSRYYTNQSLRKAFEAAPADATIDLNMQLTKLAHGLLSGKYSVPALENDENANVATSTITAKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFLDQVERANTGKSEVDPARSFKFGIEDRILCSSGKVAYNRRHDYILSLNIPLDEATNKEELEAFQKLKAEKLVEGKEVCGDEIVRPRVPLEACLANFSAPEEIHDFYSTALKAKTTAMKMAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGHQAGEELLPDGEEVIGHPIIVPYFPSYSMDMAIFRSENSSYSVKHKVIKKRKRPKIPGEEASMKPSANEEIVSQLASMGFNYLHCQKAAISTLNVGVEEAMNWLLSHMDDPDIDNPIINEGLNSENLSTVDQSKVDTLISFGFQEEIARKALKASGGDIEKATDWIFSNPDASASSMDATSSHTSVPNDAALPDGGGKYRLIGIVSHIGTSTQCGHYVAHILKDGRWVIFNDNKVGASINPPKDMGYLYFFERLAS 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2924 863 SUPERFAMILY UBA-like 732 778 IPR009060 GO:0005515
Sto4g2924 863 ProSiteProfiles Zinc finger UBP-type profile. 161 278 IPR001607 GO:0008270
Sto4g2924 863 CDD Peptidase_C19B 321 859 - -
Sto4g2924 863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 265 IPR013083 -
Sto4g2924 863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 111 IPR013083 -
Sto4g2924 863 Pfam Ubiquitin carboxyl-terminal hydrolase 320 858 IPR001394 GO:0004843|GO:0016579
Sto4g2924 863 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 777 862 - -
Sto4g2924 863 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 626 - -
Sto4g2924 863 Gene3D - 663 724 - -
Sto4g2924 863 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 320 861 IPR028889 -
Sto4g2924 863 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 806 824 IPR018200 GO:0004843|GO:0006511
Sto4g2924 863 Pfam Variant UBP zinc finger 16 78 IPR041432 -
Sto4g2924 863 SMART Zf_UBP_1 184 239 IPR001607 GO:0008270
Sto4g2924 863 Pfam Zn-finger in ubiquitin-hydrolases and other protein 185 265 IPR001607 GO:0008270
Sto4g2924 863 SUPERFAMILY Cysteine proteinases 315 860 IPR038765 -
Sto4g2924 863 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 321 336 IPR018200 GO:0004843|GO:0006511
Sto4g2924 863 Gene3D - 726 782 - -
Sto4g2924 863 PIRSF UBP 6 862 IPR016652 GO:0004843|GO:0016579
Sto4g2924 863 Pfam UBA/TS-N domain 675 711 IPR015940 -
Sto4g2924 863 Pfam UBA/TS-N domain 738 773 IPR015940 -
Sto4g2924 863 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 736 776 IPR015940 -
Sto4g2924 863 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 626 - -
Sto4g2924 863 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 777 862 - -
Sto4g2924 863 SMART uba_6 675 713 IPR015940 -
Sto4g2924 863 SMART uba_6 738 775 IPR015940 -
Sto4g2924 863 CDD UBA2_atUBP14 740 777 - -
Sto4g2924 863 Gene3D Cysteine proteinases 313 662 - -
Sto4g2924 863 CDD UBA1_atUBP14 675 719 - -
Sto4g2924 863 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 673 714 IPR015940 -
Sto4g2924 863 SUPERFAMILY RING/U-box 163 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2924 Sto-Chr4 29737802 29746831 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2924 K11836 - gmx:100805602 1350.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2924 4 29737802 29746831 Sto4g2924 4 29737802 29746831 ECH