Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0378 ATGGTCACCAAGCTCTTCCTCAGACCTCACTCTCTCTCCTTCACACTTCTCTCTGGAATCCACTTGTTCCCGAAGACCTCTCTCTCTAAACCTATTACTCTCTGTCTCCTCTCCACCACCGCAACCACCCCAATCCTGACCTTAACCCAGACACTAGACCCGAACCTCTCCTATGGGCCGTCTCTCCACAAAGGCACAAAACCATTAAATCACCAAAATCACCAATTAATTGCAGCAACTCCAGGAGAAGAAGAGTGTGTTTTTGATAAAGAAGCCTTCACTAGGGTTTTCAACCTTACAGCCATTAGAGTACCTTCAAAGGACTGTTTCGCCCTCGAAAACCGCCTCCGAGGGCACCTTCTGAACTGGCCTCGAATCCGGAACGTTGCTAGAGTTCCAGGGGATGAGGTGGAAGATGGGCTGGTGAAATTGTTGGGAGAGAAAAGGAATAGTAGTGACGGGAGTGAGAGTGAAGGGGATTTTGATTCACTGAATAGGAGAATTTACGGGAAAGCGGAAGGAGATGGCGAAATCTTGAGTCCAGTTTTGTACAGGGATACGCTTGCCAAGACATTTGATTCCCAGGGTTTTGCGAATTTTAGGAATCTTGCAAAGTTGTCTAGGCCAAAGAAGAAGAAGAGGAGGAAGGAGGAGGAGAGGAGTGAGGGGAAGAAACGCACTGGGAAGAATGAGTTTGCAATGGTGGAAGTGGTTGAAGACGGGGAGGAGGGGGAAGATTTGAGAGGGTTGCTGGGGGAGGAATTTAAAAGGAAGAGGTGGAGAGGCTCAACAAGGTTGTTGCTTCTGGATGAGCGGTATGCGGATAAAGGCGTGGAAGAGTTGCCCGAGGCAATTAAGGCAGTGTTAAAAGAAGATACTGGCCAAAGCATGACATCAACTTTTGAGCTTGTGAAATGCAAGCTGACCTTGTTTTATAATTACTGGCAGATGAATGAGATCTTAGAGGCCTTGCTGCCTGAAGGTATGATTGTTCCTTCAGCCTTTGAAATGGTTGGGCATATTGCACACCTGAACCTCAGAGATGAGCATCTACCATACAAGAAGCTCATTGCAAAGGTAGTTTTGGATAAAAACAAGCCAAAGATACAAACAGTTGTCAATAAGACTGATGCCATCCACAATGACTACAGAACAATGCAGCTTGAGGTTTTGGCTGGAAACCGTTCCCTTGTGACTACAGTAATTGAGAATGGAATGCGTTTTCAGGTTGATTTAGCAACAGTGTATTGGAATTCAAGGCTTGCAACTGAAAGACAAAGGCTCCTGAACTGCTTTACGCGCAATGATGTTGTTTGTGACGTCTTCTCTGGGGTTGGCCCAATAGCTATCTCAGCAGCAAAGAAAGTAAAGCGTGTGTATGCTAATGACTTAAACCCTTATGCAATTGAATACCTGGAAAGCAATAGTGTTCTCAACAAACTTGAGAGGAAGATCAAGGTATTTAACATGGATGGAAGGAGGTTCATCAATGCCATGTTTACTAGTGATAAGGCTGAGTCTATCACACAAGTTGTTATGAATTTGCCTAATGATGCTGCCGAGTTTCTAGATGCCTTCAGGGGAATATTCAGAAAGAAGTCCAGGGATAAACAACTGAAATTACCAATGATCCATGTTTATGGGTTCTCTAAAGCTCAAGATCCAGAATTTGATTTCCATCAGCGGATAAGAATTGCGCTTTCAGAGGTTGCAGTTGATGTAGAAATGCACAGGGTTCGACTGGTTGCACCAGGAAAATGGATGTTGCGGGCATCATTCATCCTCCCCAAGAGTGTGGTATTTGCAAAAGCAGTGTTATATATGTAA 1827 0.4472 MVTKLFLRPHSLSFTLLSGIHLFPKTSLSKPITLCLLSTTATTPILTLTQTLDPNLSYGPSLHKGTKPLNHQNHQLIAATPGEEECVFDKEAFTRVFNLTAIRVPSKDCFALENRLRGHLLNWPRIRNVARVPGDEVEDGLVKLLGEKRNSSDGSESEGDFDSLNRRIYGKAEGDGEILSPVLYRDTLAKTFDSQGFANFRNLAKLSRPKKKKRRKEEERSEGKKRTGKNEFAMVEVVEDGEEGEDLRGLLGEEFKRKRWRGSTRLLLLDERYADKGVEELPEAIKAVLKEDTGQSMTSTFELVKCKLTLFYNYWQMNEILEALLPEGMIVPSAFEMVGHIAHLNLRDEHLPYKKLIAKVVLDKNKPKIQTVVNKTDAIHNDYRTMQLEVLAGNRSLVTTVIENGMRFQVDLATVYWNSRLATERQRLLNCFTRNDVVCDVFSGVGPIAISAAKKVKRVYANDLNPYAIEYLESNSVLNKLERKIKVFNMDGRRFINAMFTSDKAESITQVVMNLPNDAAEFLDAFRGIFRKKSRDKQLKLPMIHVYGFSKAQDPEFDFHQRIRIALSEVAVDVEMHRVRLVAPGKWMLRASFILPKSVVFAKAVLYM* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0378 608 Gene3D Vaccinia Virus protein VP39 398 595 IPR029063 -
Vvi19g0378 608 CDD AdoMet_MTases 438 495 - -
Vvi19g0378 608 ProSiteProfiles SAM-dependent methyltransferase TRM5/TYW2-type domain profile. 335 597 IPR030382 -
Vvi19g0378 608 MobiDBLite consensus disorder prediction 207 229 - -
Vvi19g0378 608 Gene3D - 316 394 - -
Vvi19g0378 608 PANTHER TRNA METHYLTRANSFERASE 83 592 - -
Vvi19g0378 608 FunFam tRNA (guanine(37)-N1)-methyltransferase 398 595 - -
Vvi19g0378 608 FunFam tRNA (guanine(37)-N1)-methyltransferase 317 395 - -
Vvi19g0378 608 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 331 597 IPR029063 -
Vvi19g0378 608 Hamap tRNA (guanine(37)-N1)-methyltransferase [TRMT5]. 85 597 IPR025792 GO:0009019|GO:0030488
Vvi19g0378 608 Pfam Met-10+ like-protein 334 533 IPR030382 -
Vvi19g0378 608 MobiDBLite consensus disorder prediction 215 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0378 Vvi-Chr19 4163263 4172072 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0378 K15429 - vvi:100241770 1149.81