Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g0240 . Acco08g1057 . Accr13g01031 . . . Aed5g1168 Aev10g1362 . Ahy18g1366 . Aip08g01462 . . Alju10g1049 . . . Apr5g0116 . . . . . Bisa02g2952 Bva09g00870 Bva07g01742 . . . Cca04g01428 . Dere07g1190 Dod10g0981 . . Enph8g0368 . Glsi04g1163 Gma06g02196 Gma12g01416 . . Gso6g2022 Gso6g2022 . . . Lal1g1637 Lal2g0581 . . . . . . . . . . . . Lasa4g01429 . . . . . Lele30g0627 Lele31g0765 Lele32g0753 . Lja3g4828 . . . . . . . Mibi07g1028 . . . . . Phco9g01779 . Prci6g1230 . . . Pste1g03989 . . . Pte17g00381 . . . Pvu11g1647 . . . . . Spst11g00608 . Ssu3g1792 . Sto4g2854 . . . . . . . . . . . Vimu5g00581 . . . . . Vra2g1231
Vvi19g0241 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0242 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0243 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0245 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pvu11g1100 . . . . . Spst11g01051 . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0247 . . . . . . . . . . . . . . . . . . . . . Arst3g01648 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mesa13g03769 . . . . . . . . . . . . . Pste1g03162 . . . . . . . Pvu11g1103 . . . . . . . . . . . . . . . . . . . . . Vimu5g01560 . . . Vivi5g01828 . .
Vvi19g0248 . . . . . Adu03g01281 . . . . . . . . . . . . . . . Arst3g01651 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu11g00213 . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01194 . . . . . Pste1g03166 . . . Pte17g00527 . Pumo11g01177 . Pvu11g1104 . Rops3g01281 . . . . . . . . . . . . . . . Vian5g00882 . Vifa6g00230 . . . Viun11g01549 . . . .
Vvi19g0249 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pte Pte17g00527 Chr17 7325576 7331207 +
Pvu Pvu11g1100 Chr11 12497739 12501127 -
Spst Spst11g01051 Chr11 34694679 34698404 +
Arst Arst3g01648 Chr3 18349960 18352685 +
Mesa Mesa13g03769 Chr13 51219443 51230042 +
Pste Pste1g03162 Chr1 14298238 14302538 +
Pvu Pvu11g1103 Chr11 12670856 12672145 +
Vimu Vimu5g01560 Chr5 27051648 27056454 -
Vivi Vivi5g01828 Chr5 67598242 67604200 -
Adu Adu03g01281 Chr03 17918249 17923557 +
Arst Arst3g01651 Chr3 18829043 18830443 -
Lapu Lapu11g00213 Chr11 4883628 4888853 -
Phco Phco9g01194 Chr9 11447627 11452123 +
Pste Pste1g03166 Chr1 14321071 14331279 +
Pte Pte17g00527 Chr17 7325576 7331207 +
Pumo Pumo11g01177 Chr11 41025093 41029866 -
Pvu Pvu11g1104 Chr11 12710937 12715605 +
Rops Rops3g01281 Chr3 18519575 18523499 +
Vian Vian5g00882 Chr5 29548203 29552143 -
Vifa Vifa6g00230 Chr6 99094432 99098534 -
Viun Viun11g01549 Chr11 31762130 31768141 +
Vvi Vvi19g0240 Chr19 2599495 2605072 -
Acco Acco08g1057 Chr08 10454310 10458605 +
Accr Accr13g01031 Chr13 12371752 12375989 +
Aed Aed5g1168 Chr5 10100690 10105966 +
Aev Aev10g1362 Chr10 17093597 17098161 -
Ahy Ahy18g1366 Chr18 25296992 25300848 +
Aip Aip08g01462 Chr08 24108814 24112627 +
Alju Alju10g1049 Chr10 10305003 10311250 +
Apr Apr5g0116 Chr5 1022517 1027500 +
Bisa Bisa02g2952 Chr02 74832083 74833619 -
Bva Bva09g00870 Chr09 4476029 4481017 +
Bva Bva07g01742 Chr07 16152496 16157893 -
Cca Cca04g01428 Chr04 19009496 19015373 +
Dere Dere07g1190 Chr07 15285495 15291196 +
Dod Dod10g0981 Chr10 27853336 27858838 -
Enph Enph8g0368 Chr8 12387623 12389954 -
Glsi Glsi04g1163 Chr04 10756067 10761061 +
Gma Gma06g02196 Chr06 40083814 40090532 -
Gma Gma12g01416 Chr12 22628552 22634876 -
Gso Gso6g2022 Chr6 36229360 36236281 -
Gso Gso6g2022 Chr6 36229360 36236281 -
Lal Lal1g1637 Chr1 18778155 18784919 -
Lal Lal2g0581 Chr2 3498200 3503308 +
Lasa Lasa4g01429 Chr4 154475794 154480299 -
Lele Lele30g0627 Chr30 10971498 10975574 -
Lele Lele31g0765 Chr31 15371660 15376268 -
Lele Lele32g0753 Chr32 4875591 4886622 +
Lja Lja3g4828 Chr3 90299000 90305364 +
Mibi Mibi07g1028 Chr07 14106552 14111703 +
Phco Phco9g01779 Chr9 41785419 41791941 +
Prci Prci6g1230 Chr6 8928101 8933161 +
Pste Pste1g03989 Chr1 21472809 21480509 +
Pte Pte17g00381 Chr17 4955503 4960520 -
Pvu Pvu11g1647 Chr11 41826471 41833004 +
Spst Spst11g00608 Chr11 28235900 28242566 -
Ssu Ssu3g1792 Chr3 55886579 55892550 -
Sto Sto4g2854 Chr4 29257169 29261833 -
Vimu Vimu5g00581 Chr5 6308214 6310612 +
Vra Vra2g1231 Chr2 17326655 17332275 -
Vvi Vvi19g0241 Chr19 2605445 2605456 +
Vvi Vvi19g0242 Chr19 2605535 2605756 +
Vvi Vvi19g0243 Chr19 2609294 2609530 -
Vvi Vvi19g0244 Chr19 2619638 2620796 +
Vvi Vvi19g0245 Chr19 2630096 2638598 -
Pvu Pvu11g1100 Chr11 12497739 12501127 -
Spst Spst11g01051 Chr11 34694679 34698404 +
Vvi Vvi19g0246 Chr19 2643238 2643486 -
Vvi Vvi19g0247 Chr19 2649604 2653203 -
Arst Arst3g01648 Chr3 18349960 18352685 +
Mesa Mesa13g03769 Chr13 51219443 51230042 +
Pste Pste1g03162 Chr1 14298238 14302538 +
Pvu Pvu11g1103 Chr11 12670856 12672145 +
Vimu Vimu5g01560 Chr5 27051648 27056454 -
Vivi Vivi5g01828 Chr5 67598242 67604200 -
Vvi Vvi19g0248 Chr19 2667926 2670239 -
Adu Adu03g01281 Chr03 17918249 17923557 +
Arst Arst3g01651 Chr3 18829043 18830443 -
Lapu Lapu11g00213 Chr11 4883628 4888853 -
Phco Phco9g01194 Chr9 11447627 11452123 +
Pste Pste1g03166 Chr1 14321071 14331279 +
Pte Pte17g00527 Chr17 7325576 7331207 +
Pumo Pumo11g01177 Chr11 41025093 41029866 -
Pvu Pvu11g1104 Chr11 12710937 12715605 +
Rops Rops3g01281 Chr3 18519575 18523499 +
Vian Vian5g00882 Chr5 29548203 29552143 -
Vifa Vifa6g00230 Chr6 99094432 99098534 -
Viun Viun11g01549 Chr11 31762130 31768141 +
Vvi Vvi19g0249 Chr19 2673932 2682307 +