Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi19g0245 | ATGGCACATTTGACGAGCTCGAACTCTTTACAGAAGCAATTGAGAGTTCCACTTCCACATACCACCGAGAAGGGCATAAGAAGCAACGACACTTTCATAGGTTTCTTCTCTGGCCAAAGTATGTCTTCTTTCCCACTATCAATCACCCAGAAGGCTGATCCTAAGCTGGCTCGCAACACTGCAAACTTTGTTCCCAACTTCTGGGGTGACTGTTTCCTCACCTACATTCCTGATGATACGGTAACACATGCCTGCAAAGAAAAAGAACTTGAAGGACTGAAAGAAGAAGTGAGAAACGAGCTAAAAGCTACTGCTGGGAAGTCTTCACAACTGCTGAACTTCATAGATTCAATCCAACGCTTGGGCTTGGCTTACCACTTTGAAAGGGAGATAGAAGACGCATTAAAAGTTATGTATGAAACATATAATTTGGTTGATGATGATAACGATGACCTTGCGAGTGCTGCTCTTCGATTCCGGTTACTAAGACAAGAAGGCTACCACATTCCATCCGATGTATTTAAGAAGTTCAAGGACGAGGAAGGCAACTTCAAGGAATCATTGGTGGGTGACTTACCAGGCATGCTAGCTCTATATGAAGCTACACATTTAATGGTGCATGGAGAAGACATACTGGATGAAGCCCAGGCTTTCACCACTGCCCACCTTCAGTCCATGGCACCTGATTCAGATAATCCTCTCAAAAAACAAGTGATTCACGCTCTAGAGCGGCCGATTCGCAAGAGCTTAATAAGGGTGGAGGCAAGGCACTACATTTCCATCTACCAAGAATATGATTCACATAATAAATCTTTACTTAAGCTTGCAAAGTTAGATTTCAACCTGTTGCAGTCACTCCACAGGAAAGAGCTGAGTGAGATCACTAAGTGGTGGAAAGGTTTAGATTTTGCTACAAAGCTACCCTTTGCAAGGGACAGAATAGTGGAGGGATACTTTTGGGTATTGGGAGTGTACTTTGAGCCCCAATATTTCCTTGCTAGAAGGATCTTACTGAAAGTATTCGCCATGACATCCATTATAGATGATATATATGACACACATGGTACATTTGAAGAACTCAAACTCTTTGCCGAAGCGATTGAGAGATGGGATGCCAGCAGCATAGATCAACTCCCAGATTATATGAAGTTGTGTTATCAGGCTCTCTTAGATGTCTTTGAAGAAATAGAGGAAGAGATGACCAAGCAAGAAAAACCATACCGTGTTCACTATGCAAAACAAGCAATGAAAAAGCTAGTCCAAGCCTATTTTGTTGAAGCCAAATGGTTGAAGCAAGAATATATACCAACAATTGAGGAGTACATGACCAACGCACTAGTAAGTTGTGGCTACTTTCAGCTCGCAACCATATCTTTTGTTGGCATGGGAGATATGGTAACCAAGAAGGCCTTCGATTGGGTTTTCAGTGACCCCAAGATGGTTAGAGCTTCAGCAATCATTTGCAGGCTCATGGATGACATAGTTGACCATGAGTTTGAGCAAAAAAGAGGATATGTTGTCTCAGGAGTTCAATGCTACATGAAGCAATATGGTGTTACTGAGCAAGAGGCGTGTGAGGAGTTCATTAATGAAATAATGAATGCATGGAAGGATATGAATGAGGAGTGTCTCAAACGTACACAAGTGCCCATGCCTCTTCTCACATGTGTTGTTAATTTTGCCCGTGTGATAGATCTCTTATACAAGAATCAAGACGAGTACACACATGTGGGGAAGTTGATGAAAGATCTTATTGCATGGATGCTTATAGACCCTGTGCCAATGTAA | 1788 | 0.4223 | MAHLTSSNSLQKQLRVPLPHTTEKGIRSNDTFIGFFSGQSMSSFPLSITQKADPKLARNTANFVPNFWGDCFLTYIPDDTVTHACKEKELEGLKEEVRNELKATAGKSSQLLNFIDSIQRLGLAYHFEREIEDALKVMYETYNLVDDDNDDLASAALRFRLLRQEGYHIPSDVFKKFKDEEGNFKESLVGDLPGMLALYEATHLMVHGEDILDEAQAFTTAHLQSMAPDSDNPLKKQVIHALERPIRKSLIRVEARHYISIYQEYDSHNKSLLKLAKLDFNLLQSLHRKELSEITKWWKGLDFATKLPFARDRIVEGYFWVLGVYFEPQYFLARRILLKVFAMTSIIDDIYDTHGTFEELKLFAEAIERWDASSIDQLPDYMKLCYQALLDVFEEIEEEMTKQEKPYRVHYAKQAMKKLVQAYFVEAKWLKQEYIPTIEEYMTNALVSCGYFQLATISFVGMGDMVTKKAFDWVFSDPKMVRASAIICRLMDDIVDHEFEQKRGYVVSGVQCYMKQYGVTEQEACEEFINEIMNAWKDMNEECLKRTQVPMPLLTCVVNFARVIDLLYKNQDEYTHVGKLMKDLIAWMLIDPVPM* | 596 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi19g0245 | 595 | Gene3D | - | 106 | 268 | IPR036965 | GO:0010333|GO:0016829 | |
| Vvi19g0245 | 595 | SFLD | Isoprenoid Synthase Type I | 268 | 593 | - | - | |
| Vvi19g0245 | 595 | FunFam | Isoprene synthase, chloroplastic | 235 | 583 | - | - | |
| Vvi19g0245 | 595 | PANTHER | OS04G0344100 PROTEIN-RELATED | 59 | 584 | - | - | |
| Vvi19g0245 | 595 | SFLD | Terpene Cyclase Like 1 C Terminal Domain | 268 | 593 | IPR034741 | - | |
| Vvi19g0245 | 595 | Coils | Coil | 83 | 103 | - | - | |
| Vvi19g0245 | 595 | Pfam | Terpene synthase family, metal binding domain | 273 | 538 | IPR005630 | GO:0000287|GO:0010333|GO:0016829 | |
| Vvi19g0245 | 595 | SUPERFAMILY | Terpenoid synthases | 268 | 593 | IPR008949 | - | |
| Vvi19g0245 | 595 | Gene3D | Farnesyl Diphosphate Synthase | 65 | 583 | IPR008949 | - | |
| Vvi19g0245 | 595 | FunFam | Isoprene synthase, chloroplastic | 106 | 268 | - | - | |
| Vvi19g0245 | 595 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Vvi19g0245 | 595 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Vvi19g0245 | 595 | SUPERFAMILY | Terpenoid cyclases/Protein prenyltransferases | 65 | 268 | IPR008930 | - | |
| Vvi19g0245 | 595 | Pfam | Terpene synthase, N-terminal domain | 68 | 242 | IPR001906 | GO:0010333|GO:0016829 | |
| Vvi19g0245 | 595 | CDD | Terpene_cyclase_plant_C1 | 58 | 592 | IPR044814 | GO:0010333|GO:0016102 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi19g0245 | Vvi-Chr19 | 2630096 | 2638598 | Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi19g0245 | K15803 | - | vvi:100267551 | 1093.18 |