LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu5g01560	TTGAACAAAATGACTCTGGTGAACCCAACTTTGCTCAATTCCTCTTTTATTCCACATCTCACTTTTTCCAAACCTCTGAAACCAGTAGCTCCTATTCTTCTCCAACGTAGGATAATCTTTCCTCGCTACAACGCAACCACCGCAAACGTTAACGATTCTGAAAGAAAATCTGCAAACTACCAACCCAACCTCTGGACTTACGACTTTCTGCAGTCCTTGAAGCATGCCTACGCTGATATAAGATACGAGGACAGGGCGAAGATGTTGAAGGAGGAAGTGAGGAGAATGATAAAGGATGAAAGTTCAGACATATGGCTCAAACTTGAACTCATTAACGATGTGAAACGCTTGGGTCTGAGTTACCATTATGACAAGGAGATACATGAAGTCCTTCTTCGGTGTCACTCTTCTGCAGGATTCAGTGCCACATTCGTTAACACAAGTTTACATGAAACTGCTTTGTGCTTTAGGCTTCTCAGAGAATATGGCCATGATGTCTCACCAGATATATTTGAGAGGTTTAAGGAGGAGAATGGCAATTTCAAGGAAAACCTTGTGAGTGATGTGAAGGGAATGCTGAGTCTGTACGAGGCATCGTTTCTTGGATACGAAGGAGAGAAGATTTTGGATGAGGCCATGGTGTTCTCTAGCTTCCATCTTAGGGTTGCCCTCAACAAAGGTAAAAGCAGTAACATGCTTTTGGAACAAGTCAATCATGCATTGGAGCTTCCACTCCATCACAGAATTCAAAGGCTAGAAGCAAGGTGGTATATTGAATCTTATGCCAAAAGAACAGACTCAAATCAACTGCTGCTTGAAGCAGCAAAACTTGATTTCAATATTGTGCAGTCAACACTGCAAAATGATCTCCAACAAATGTCAAGGTGGTGGAGAGGAATGGGACTGGCCTCAAAGTTAAGCTTCAGCCGAGACAGACTAATGGAATGCTTCTTTTGGACTGTTGGAATGGTCTTCGAGCCTCAGTTCAGTGATCTCCGCAAAGGCTTAACAAAAGTTACTTCCTTAATAACTACAATCGATGACGTTTATGATGTCTATGGAACCTTAGACGAATTAGAACTTTTCACTGCAGCTGTTGAAAGTTGGGATGTTAAAGCAGTTCAAGTTCTCCCTGATTACATGAAGATATGTTTTCTGGCACTGTACAACACTGTCAACGAATTTGCCTATGATGCCCTTAAGGAACATGGACAAGATATTTTACCCTACCTCACCAAAGCATGGTCTGATATGTTGAAAGCATTCCTACAAGAAGCCAAATGGAGTCGCGACAGACACTTGCCAAAATTCGAGGATTACCTCAACAATGCATGGGTCTCAGTCTCCGGGGTGGCAGAGTTAGAGAGAGGTGAAGCAGCAAGCTCCATTGTATGTTACATAAGAGAAAGTGGTGCTAGTGAAGAGGGTGCTTACAAGCACATCCATAGTTTGCTTAACGAAACGTGGAAGAAGATGAACAAAGATAGAGTGTCAGAGTCTCCTTTCCCTAAAGCTTTCGTAGAAACAGCCATGAACCTTGGAAGAATTTCTCAGTGCACGTATCAGTATGGAGATGGACATGGAGCCCCCGATAGCACTGCCAAGAGTCGCATACGATCTTTGATAATTGAACCCATTGCACTTTACGAGACGGAGGCATTTTAA	1665	0.4276	MNKMTLVNPTLLNSSFIPHLTFSKPLKPVAPILLQRRIIFPRYNATTANVNDSERKSANYQPNLWTYDFLQSLKHAYADIRYEDRAKMLKEEVRRMIKDESSDIWLKLELINDVKRLGLSYHYDKEIHEVLLRCHSSAGFSATFVNTSLHETALCFRLLREYGHDVSPDIFERFKEENGNFKENLVSDVKGMLSLYEASFLGYEGEKILDEAMVFSSFHLRVALNKGKSSNMLLEQVNHALELPLHHRIQRLEARWYIESYAKRTDSNQLLLEAAKLDFNIVQSTLQNDLQQMSRWWRGMGLASKLSFSRDRLMECFFWTVGMVFEPQFSDLRKGLTKVTSLITTIDDVYDVYGTLDELELFTAAVESWDVKAVQVLPDYMKICFLALYNTVNEFAYDALKEHGQDILPYLTKAWSDMLKAFLQEAKWSRDRHLPKFEDYLNNAWVSVSGVAELERGEAASSIVCYIRESGASEEGAYKHIHSLLNETWKKMNKDRVSESPFPKAFVETAMNLGRISQCTYQYGDGHGAPDSTAKSRIRSLIIEPIALYETEAF	554

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu5g01560	554	PANTHER	OS04G0344100 PROTEIN-RELATED	54	449	-	-
	Vimu5g01560	554	SFLD	Isoprenoid Synthase Type I	267	450	-	-
	Vimu5g01560	554	SUPERFAMILY	Terpenoid synthases	268	546	IPR008949	-
	Vimu5g01560	554	Gene3D	Farnesyl Diphosphate Synthase	451	550	IPR008949	-
	Vimu5g01560	554	Gene3D	-	65	281	IPR036965	GO:0010333\|GO:0016829
	Vimu5g01560	554	Gene3D	Farnesyl Diphosphate Synthase	282	450	IPR008949	-
	Vimu5g01560	554	Pfam	Terpene synthase family, metal binding domain	272	449	IPR005630	GO:0000287\|GO:0010333\|GO:0016829
	Vimu5g01560	554	Pfam	Terpene synthase family 2, C-terminal metal binding	453	491	-	-
	Vimu5g01560	554	SFLD	Terpene Cyclase Like 1 C Terminal Domain	267	450	IPR034741	-
	Vimu5g01560	554	SUPERFAMILY	Terpenoid cyclases/Protein prenyltransferases	61	265	IPR008930	-
	Vimu5g01560	554	CDD	Terpene_cyclase_plant_C1	55	545	IPR044814	GO:0010333\|GO:0016102
	Vimu5g01560	554	FunFam	Isoprene synthase, chloroplastic	102	267	-	-
	Vimu5g01560	554	Pfam	Terpene synthase, N-terminal domain	65	241	IPR001906	GO:0010333\|GO:0016829

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu5g01560	Vimu-Chr5	27051648	27056454	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu5g01560	K12742		K19968	gmx:100782452	847.425

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu5g01560	5	27051648	27056454	Vimu5g01560	5	27051648	27056454	ECH
	Vimu4g00939	4	7738243	7742395	Vimu5g01560	5	27051648	27056454	PCT