Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0244 ATGCCCGGCATACAGAGGAAGATGAAGAGGGCAAGACGAAGACGTACAGGAGACGAGTACATATCCGATGACGGTGATTTTGGGGAGGACCTGCTTAGCGAGTTGCCGGATGAAATTCTTATTTCAATACTATCTCGCCTAACCCTAAGGGAAGCTGCGGCTACCAGTGTTCTCTCACAGCGATGGAGGTACTTGTGGACATATACTTCACGTCTCAACTTCGATTCAGTAGTTAACAAAATTGTCAGACGGTCGCATTCCTTCGCCCTTTCGACTGCTGCAGGGCGGCGGCGGCGGCGGCGCAAATATATTAAATGGGTTCACAAGGTCTTGGCAAAGTATAGAGGCGGCCGAAACTTAGATGAATTCAGGGTTTGTTTTGATTTGTCTAAGAGATCTCGTTCTGATATCGACAAATGGTTTGAGTTTGCAATGTCAAAGAATGTCAAAAACCTTGAGTTCGACTTCTTAAGATGTTCTTCTCAGAATCAGGATCGGGATCCCTGGTTCGTCATGTTAAGTTATTTTCAGAATTTCTATAAATTCCCGCATCGAATTTTGGGAGTGAGGGAAGCACGGGATCCTAATGGTATGTTTGTTGGCTTTAAGTCCCTTAAAACTTTGTCATTGAAGTCCATAAATGTGAGCAGCGAAGCTGTTGAGTATTTCTTATCGAACTGCCCTCTTCTCGAACGGCTATCTGTGCATGGCAGCGAAAGTTTGGTTAATTTAAGGGTTGCTGGCCCATCCATCATGCTGAGGCACTTGGAGATAGTCAAGTGTTCCTCTATCCAAACCATTGAGATATGTGACACAAACCTCGTTTCCTTTACCTATCGGGGAGAAAGGAAGGGAGATCTGCTGCCAAACAATATGCATATTGAGAATTCACCTCTCCTCGTTGAGGTATTGGCCGGTGTTGGAAGATTAGGGTTTGCAAAGAATATGCTTTTGAAGCTTTCATCTTGTGTTCATCAGCTGCAGATTCTTCAATTGACAGTCGATCATTTTTTTCCGGTTAGTTTATGTATAGCTGATTTTCTTTCTTTTGTGCTTTTTGAAATTATAAAGTGA 1074 0.4339 MPGIQRKMKRARRRRTGDEYISDDGDFGEDLLSELPDEILISILSRLTLREAAATSVLSQRWRYLWTYTSRLNFDSVVNKIVRRSHSFALSTAAGRRRRRRKYIKWVHKVLAKYRGGRNLDEFRVCFDLSKRSRSDIDKWFEFAMSKNVKNLEFDFLRCSSQNQDRDPWFVMLSYFQNFYKFPHRILGVREARDPNGMFVGFKSLKTLSLKSINVSSEAVEYFLSNCPLLERLSVHGSESLVNLRVAGPSIMLRHLEIVKCSSIQTIEICDTNLVSFTYRGERKGDLLPNNMHIENSPLLVEVLAGVGRLGFAKNMLLKLSSCVHQLQILQLTVDHFFPVSLCIADFLSFVLFEIIK* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0244 357 Gene3D Ribonuclease Inhibitor 104 343 IPR032675 -
Vvi19g0244 357 Pfam F-box domain 32 66 IPR001810 GO:0005515
Vvi19g0244 357 Gene3D - 23 71 - -
Vvi19g0244 357 PANTHER F-BOX PROTEIN-LIKE 31 336 - -
Vvi19g0244 357 SMART fbox_2 35 76 IPR001810 GO:0005515
Vvi19g0244 357 SUPERFAMILY F-box domain 28 72 IPR036047 GO:0005515
Vvi19g0244 357 ProSiteProfiles F-box domain profile. 29 77 IPR001810 GO:0005515
Vvi19g0244 357 CDD F-box_AtFBL13-like 32 67 - -
Vvi19g0244 357 SUPERFAMILY RNI-like 198 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0244 Vvi-Chr19 2619638 2620796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0244 30 233 EF-hand Containing Proteins AT5G41840 28.761 1.24e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0244 - - vvi:104877511 651.358