Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0247 ATGTCTTCTTTCCCACTATCAATCACCCAGAAGGCTGATCCTAAGCTGGCTCGCAACACTGCAAACTTTGTTCCCAACTTCTGGGGTGACTGTTTCCTCACCTACATTCCTGATGATACGGTAACACATGCCTGCAAAGAAAAAGAACTTGAAGGACTGAAAGAAGAAGTGAGAAAGGAGCTAAAAGCTACTGCTGGGAAGTCTTCACAACTGCTGAACTTCATAGATTCCATCCAACGCTCGGGCTTGGCTTACCACTTTGAAAGGGAGATAGAAGAAGCATTAAAAGTTATGTATGAAACATATAATTTGGTTGATGATGATAACGATGACCTTGCCAGTGCTGCTCTTCGAATCCGGTTACTAAGACAAGAAGGCTACCACATTCCATCCGATGTATTTAAGAAGTTCAAGGACGAGGAAGGCAACTTCAAGGAATCATTGGTGGGTGACTTACCAGGCATGCTAGCTCTATATGAAGCTACACATTTAATGCGGCCGATTCGCAAGAGCTTAATAAGGGTGGAGGCAAGGCACTACATTTCCATCTACCAAGAATATGATTCACATAATAAATCTTTACTTAAGCTTGCAAAGTTAGATTTCAACCTGTTGCAGTCACTCCACAGGAAAGAGCTGAGTGAGATCACTAAGTGGTGGAAAGGTTTAGATTTTGCTACAAAGCTACCCTTTGCAAGGGACAGAATAGTGGAGGGATACTTTTGGGTATTGGGAGTGTACTTTGAGCCCCAATATTTCCTTGCTAGAAGGATCTTACTGAAAGTATTCGCCATGACATCCATTATAGATGATATATATGACACACATGGTACATTTGAAGAACTCAAACTCTTTGCCGAAGCGATTGAGAGATGGGATGCCGGCAGCATAGATCAACTCCCAGATTATATGAAGTTGTGTTATCAGGCTCTCTTAGATGTCTTTGAAGAAATAGAGGAAGAGATGACCAAGCAAGAAAAACCATACCGTGTTCACTATGCAAAACAAGCAATGAAAAAGCAAGTCCAAGCCTATTTTGTTGAAGCCAAATGGTTGAAGCAAGAATATATACCAACAATTGAGGAGTACATGACCAATGCACTAGTAAGTTGTGGCTACTTTCAGCTCGCAACCATATCTTTTGTTGGCATGGGAGATATGGTAACCAAGAAGGCCTTCGATTGGGTTTTCAGTGACCCCAAGATGGTTAGAGCTTCAGCAATCATTTGCAGGCTCATGGATGACATAGTTGACCATGAGTTTGAGCAAAAAAGAGGATATGTTGTCTCAAGAGTTCAATGCTACATGAAGCAATATGGTGTTACTGAGCAAGAGGCGTGTGAGGAGTTCAATAATGAAATAATGAATGCATGGAAGGATATGAATGAGGAGTGTCTCAAACGTACACAAGTGCCCATGCCTCTTCTCACATGTGTTGTTAATTTTGCCCGTGTGATAGATCTCTTATACAAGAATCAAGACGAGTACACACATGTGGGGAAGTTGATGAAAGATCTTATTGCATGGATGCTTATAGACCCTGTGCCAATGTAA 1554 0.4157 MSSFPLSITQKADPKLARNTANFVPNFWGDCFLTYIPDDTVTHACKEKELEGLKEEVRKELKATAGKSSQLLNFIDSIQRSGLAYHFEREIEEALKVMYETYNLVDDDNDDLASAALRIRLLRQEGYHIPSDVFKKFKDEEGNFKESLVGDLPGMLALYEATHLMRPIRKSLIRVEARHYISIYQEYDSHNKSLLKLAKLDFNLLQSLHRKELSEITKWWKGLDFATKLPFARDRIVEGYFWVLGVYFEPQYFLARRILLKVFAMTSIIDDIYDTHGTFEELKLFAEAIERWDAGSIDQLPDYMKLCYQALLDVFEEIEEEMTKQEKPYRVHYAKQAMKKQVQAYFVEAKWLKQEYIPTIEEYMTNALVSCGYFQLATISFVGMGDMVTKKAFDWVFSDPKMVRASAIICRLMDDIVDHEFEQKRGYVVSRVQCYMKQYGVTEQEACEEFNNEIMNAWKDMNEECLKRTQVPMPLLTCVVNFARVIDLLYKNQDEYTHVGKLMKDLIAWMLIDPVPM* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0247 517 Pfam Terpene synthase family, metal binding domain 195 460 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vvi19g0247 517 CDD Terpene_cyclase_plant_C1 18 514 IPR044814 GO:0010333|GO:0016102
Vvi19g0247 517 SUPERFAMILY Terpenoid synthases 190 515 IPR008949 -
Vvi19g0247 517 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 25 190 IPR008930 -
Vvi19g0247 517 Gene3D Farnesyl Diphosphate Synthase 205 517 IPR008949 -
Vvi19g0247 517 SFLD Isoprenoid Synthase Type I 190 515 - -
Vvi19g0247 517 FunFam Isoprene synthase, chloroplastic 173 505 - -
Vvi19g0247 517 Gene3D - 66 165 IPR036965 GO:0010333|GO:0016829
Vvi19g0247 517 SFLD Terpene Cyclase Like 1 C Terminal Domain 190 515 IPR034741 -
Vvi19g0247 517 PANTHER OS04G0344100 PROTEIN-RELATED 19 165 - -
Vvi19g0247 517 Coils Coil 43 63 - -
Vvi19g0247 517 Pfam Terpene synthase, N-terminal domain 28 167 IPR001906 GO:0010333|GO:0016829
Vvi19g0247 517 Gene3D - 166 204 IPR036965 GO:0010333|GO:0016829
Vvi19g0247 517 Gene3D Farnesyl Diphosphate Synthase 25 65 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0247 Vvi-Chr19 2649604 2653203 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0247 K15803 K14183 vvi:100267551 978.008