Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01281 ATGATCAAGGATGAAAATTCAGATGTATTGACCACACTTGAGCTAATTGAAGATGTGAAACGTTTGGGTCTTGGTTACCATTTTGGAAAGGAGATAGGAGAAGCCCTTGAAAGATGTAGTGGTAAAATTATTCACAGAAGCCTGCATGAAACTGCTTTAAGCTTCAGACTCCTTAGAGAATATGGCTATGATGTCTCAGCAGATAATTTTGAGAGCTTCAAGGACCACAATGGTAATTTCAAGGACAACCTTAGCAAAGATGTAAAAGGAATGTTGAGTTTATATGAGGCATCGTTTCTTGCTTATGAAGGAGAACAGATTCTGGATGAGGCCAAGGCCTTCACTACCTTCCATCTCAGGGGCATCCATGAAGATATAAGTAGTGTTCTCTATGAACAAGTGAATCATGCGTTGGAGCTTCCAGTGCATCGTAGAATCCAAAGGCTTGAAGCCAGATGGTATATTGAGTCATATGAAAAAAGAAACGATGCAAGCCGGGTGCTGGTTGAAGCGGCCAAACTGGATTTCAACATTGTGCAGTCAACACTGCAAAAGGATCTCCAAGAAATGTCAAGGTGGTGGAAGCGGATGGGACTATCCCCAAAGTTAAGCTTCAGCCGCGACAGGCTAATGGAGTGCTTCTTTTGGACAGTAGGAATGGTTTTTGAGCCTCAATTCAGTGATCTCCGCAAAGGTTTAACCAAAGTGACTTCCCTAATAACTACAATTGATGACATTTATGATGTGTATGGCACCTTTGATGAATTAGAGCTTTTCACAACAGCTGTGGAAAGTTGGGATATTAAAGCAGTTCAAGTTCTGCCAGAGTACATGAAGATATGCTTCTTCGCACTTCACAACACTGTCAACGAATTTGCTTATGACGCACTTAAAGAGCAAGGACAGGATATCCTTCCCTACGTCATCAAAGCATGGTCTGATATGTTGAAAGCATTCCTACAAGAAGCTAAGTGGTCCCGAGACAAACACTTGCCAACATTTGAGGACTACCTAAACAATGCGTGGGTGTCAGTGTCCGGTGTAGTGATACTGATCCATACCTATTTCTTGCTCAATCACAGCATTACAAAGGAAGCACTTGAGTCCTTGGACAATTGCCATGCCCTATTGCGCAGACCATCCATGATTTTTCGACTTTGCAATGATTTGGGTACTTCAACGGCAGAGTTACAGAGAGGTGAAGCAGCAAGTTCAGTGTTGTGCTACATGCATGAAAGTGGTGTCACTGATAAGGGTGCTTATGAATACATTCACAGTTTGCTTGATGCAACTTGGAAAAAGATGAACAAAGATAGAGTCACTCATTCACCTTTCCCAAAACCTTTTGTGGAAACAGCAATCAACCTTGCAAGAATTTCTCATTGCACGTACCAGTATGGAGACGGGCATGGAGCCCCAGATAGCACAGCGAAGAATCGAATACAATCTTTGATTATTGAACCCGTTCCGATCGAGTTATAG 1482 0.4231 MIKDENSDVLTTLELIEDVKRLGLGYHFGKEIGEALERCSGKIIHRSLHETALSFRLLREYGYDVSADNFESFKDHNGNFKDNLSKDVKGMLSLYEASFLAYEGEQILDEAKAFTTFHLRGIHEDISSVLYEQVNHALELPVHRRIQRLEARWYIESYEKRNDASRVLVEAAKLDFNIVQSTLQKDLQEMSRWWKRMGLSPKLSFSRDRLMECFFWTVGMVFEPQFSDLRKGLTKVTSLITTIDDIYDVYGTFDELELFTTAVESWDIKAVQVLPEYMKICFFALHNTVNEFAYDALKEQGQDILPYVIKAWSDMLKAFLQEAKWSRDKHLPTFEDYLNNAWVSVSGVVILIHTYFLLNHSITKEALESLDNCHALLRRPSMIFRLCNDLGTSTAELQRGEAASSVLCYMHESGVTDKGAYEYIHSLLDATWKKMNKDRVTHSPFPKPFVETAINLARISHCTYQYGDGHGAPDSTAKNRIQSLIIEPVPIEL* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01281 493 CDD Terpene_cyclase_plant_C1 1 488 IPR044814 GO:0010333|GO:0016102
Rops3g01281 493 Gene3D - 7 164 IPR036965 GO:0010333|GO:0016829
Rops3g01281 493 FunFam Isoprene synthase, chloroplastic 7 164 - -
Rops3g01281 493 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 3 163 IPR008930 -
Rops3g01281 493 FunFam Isoprene synthase, chloroplastic 143 479 - -
Rops3g01281 493 Gene3D Farnesyl Diphosphate Synthase 1 479 IPR008949 -
Rops3g01281 493 SUPERFAMILY Terpenoid synthases 167 489 IPR008949 -
Rops3g01281 493 PANTHER OS04G0344100 PROTEIN-RELATED 6 470 - -
Rops3g01281 493 SFLD Terpene Cyclase Like 1 C Terminal Domain 166 490 IPR034741 -
Rops3g01281 493 SFLD Terpene Cyclase Like 1 C Terminal Domain - Enzymatic 166 490 - -
Rops3g01281 493 Pfam Terpene synthase family, metal binding domain 171 434 IPR005630 GO:0000287|GO:0010333|GO:0016829
Rops3g01281 493 Pfam Terpene synthase, N-terminal domain 6 138 IPR001906 GO:0010333|GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01281 Rops-Chr3 18519575 18523499 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01281 K12742 K19968 gmx:100814880 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01281 3 18519575 18523499 Rops3g01281 3 18519575 18523499 ECH