Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0240 ATGGCAACCACCACCACCTCCAACGCCTTCCTCACCACCCCCACCAAAACCCCATCAGAAAAATCCAAGAAATCCCATCACCACTTCCCCAACTCCGACTCCAAGTCCCGATTCGAGGCCTACAACCGTCTACAATCCGCCGCAGTAGCCTTCGGCGAGAAGCTACCCATCCCCGAGATTGTCGCCCTCGGTGGCCAATCCGACGGCAAGAGCTCCCTCCTTGAAGCCCTTCTTGGATTCCGCTTCAATGTTCGCGAGGTCGAGATGGGCACACGAAGGCCTCTCATCCTTCAGATGGTGCATGATTCGACGGCGTTGGAGCCCCGGTGTCGGTTTCAGGAGGAGGATTCTGAAGAATATGGAAGTCCAGTTGTTTTGGCATCTGCAATTGCAGACATCATAAAATCCCGAACGGAGGCATATTTGAAGAAGACTAAAACTGCCGTTTCTTCTAAACCAATTGTAATGAGAGCAGAATATGCTCATTGTCCTAATCTCACCATTATTGATACCCCGGGTTTCGTTCTTAAGGCCAAGAAGGGAGAACCAGAGAACACGCCTGATGAAATTCTATCAATGGTGAAGTCTCTGGCTAGTCCTCCACATCGCATTCTTCTGTTCCTTCAACAAAGTAGTGTTGAATGGTGTTCATCGTTGTGGTTGGATGCCGTTCGGGAAATTGATCCAACCTACAGACGGACAGTAATCGTTGTTTCCAAATTTGATAATCGGCTCAAGGAGTTTACTGACCGATGGGAAGTAGATCGGTATTTGAGTGCAAGTGGTTACCTTGGAGATGGCACTCACCCATTTTTTGTAGCCCTGCCAAAAGACAGGAACACAGTTTCAAATGATGAATTCCGCAGGCAAATATCACAGGTTGACTCAGATGTCCTGCGACATCTGCGTGATGGGATCAAGGGAGGATTTGACGAAGAAAAATTCAGGCCCTTCATTGGCTTTGGCTGTCTGAGAGAATATTTGGAGTCTGAGCTTCAGAAAAGATACAAAGAAGCAGCCCCAGCAACTCTAGCTTTGCTCGAGCAGAGGTGCTGTGAAGTCACCACTGAGTTGGCTAGATTGGATTCCAAAATACAGGCTACTTCTGATGTTGCACATCTAAGAAGATGTGCAATGCTGCACACTGCCTCCATCAGCAATCATGTGGGAGTGCTGATTGATGGAGCTGCAGATCCTGCCCCTGAGCAATGGGGTAAAACAACAGAGGAAGAGCAGTCAGAGAGTGGCATTGGGAGCTGGCCGGGCATTACTGCTGTTATAAAACCTCCCAATTCTACCCTTAGACTCTATGGAGGAGCTGCTTTTGAAAGAGTGATACATGAATTTCGTTGTGCTGCATATTCCATTGAATGCCCACCAGTATCAAGGGAGAAGGTGGCAAATATACTACTTGCCCATGCTGGCCGTGGTGGAGGAAGAGGAGTAATGGAGGCAGCTGCAGAGATTGCACGTGCAGCTGCTCGGTCATGGCTTGCTCCTCTTCTTGACACTGCTTGTGATCGACTTGCTTTTGTTTTGGGGAACCTCTTTGATCTTGCTGTGGAGAGGAGTTGCAGCCGTGACTCAGACTATGGGAGGAAAAGTGGAAATATGGATGGGTATGTTGGTTTTCATGCTGCTTTAAGACACTCGTACAATCGCTTTATAAAGGATCTTGCCAAACAGTGCAAGCAACTAGTTCGACACCACCTTGACTCAGCTACAAGCCCATATTCTCAGGTTTGTTATGAGAACTTCCAAGGAGGCTCTGGCTCAGGTGTAACCTCCATGTACAGATTTAGCCAACCTTTAGTTGGGTCATTTTCCCTTGAACTATCTGAAGGGGGGCCAGCATTGCGCCATGACAAGGTGAGAGATCAAGAAAACATACCTCCAGAAAAGGATGCACAAGAAACCACACCTGGAAAAGGAGTGGAAACCAGAGAAGCTCTCCGGGAAAGCCAATTGACTGTGCCTGAAACCCCATCACCTGATCAACCATGTGATATGGTTTATGGGGGAGTTAAGAAGGAAGTTGGAAATGAACATGGAGCAAGAAAACGCCAAGCAAGAATGATTGGCCATAGCAGAAACTCAGATAATTTAAGACTTACAAATGCTGGCAGTTTTCTATTTGGAAATGCAGATAGTGGCTTGAGGTCAGGCTCAGCTTACTCTGATATTTGTTCATCTGCTGCACAGCATTTTGCCCGAATACGTGAAGTTCTTGTTGAGAGAAGTGTGATGTCAACTTTGAATTCTGGATTTTTAACCCCTTGCCGGGATCGACTTATGATGGCACTTGGATTGGATTTGTTTGCTGTAAACGACGAGAAATTCATGGATATGTTTGTTGCACCTGGGGCAATCGATATCCTTCAGAATGAACGGCAGTCTCTTGAGAAGCGGCAGAAGATACTCCAATCTTGCTTGAATGAATTTAAAAGCGTTGCTCGAGCTCTTTGA 2466 0.4704 MATTTTSNAFLTTPTKTPSEKSKKSHHHFPNSDSKSRFEAYNRLQSAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDSTALEPRCRFQEEDSEEYGSPVVLASAIADIIKSRTEAYLKKTKTAVSSKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILLFLQQSSVEWCSSLWLDAVREIDPTYRRTVIVVSKFDNRLKEFTDRWEVDRYLSASGYLGDGTHPFFVALPKDRNTVSNDEFRRQISQVDSDVLRHLRDGIKGGFDEEKFRPFIGFGCLREYLESELQKRYKEAAPATLALLEQRCCEVTTELARLDSKIQATSDVAHLRRCAMLHTASISNHVGVLIDGAADPAPEQWGKTTEEEQSESGIGSWPGITAVIKPPNSTLRLYGGAAFERVIHEFRCAAYSIECPPVSREKVANILLAHAGRGGGRGVMEAAAEIARAAARSWLAPLLDTACDRLAFVLGNLFDLAVERSCSRDSDYGRKSGNMDGYVGFHAALRHSYNRFIKDLAKQCKQLVRHHLDSATSPYSQVCYENFQGGSGSGVTSMYRFSQPLVGSFSLELSEGGPALRHDKVRDQENIPPEKDAQETTPGKGVETREALRESQLTVPETPSPDQPCDMVYGGVKKEVGNEHGARKRQARMIGHSRNSDNLRLTNAGSFLFGNADSGLRSGSAYSDICSSAAQHFARIREVLVERSVMSTLNSGFLTPCRDRLMMALGLDLFAVNDEKFMDMFVAPGAIDILQNERQSLEKRQKILQSCLNEFKSVARAL* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0240 821 MobiDBLite consensus disorder prediction 620 668 - -
Vvi19g0240 821 MobiDBLite consensus disorder prediction 400 424 - -
Vvi19g0240 821 Gene3D - 26 387 IPR027417 -
Vvi19g0240 821 FunFam Dynamin-related protein 5A 26 392 - -
Vvi19g0240 821 Pfam Dynamin family 60 240 IPR045063 -
Vvi19g0240 821 PANTHER DYNAMIN 39 815 IPR022812 -
Vvi19g0240 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 348 IPR027417 -
Vvi19g0240 821 MobiDBLite consensus disorder prediction 1 36 - -
Vvi19g0240 821 MobiDBLite consensus disorder prediction 620 650 - -
Vvi19g0240 821 MobiDBLite consensus disorder prediction 1 18 - -
Vvi19g0240 821 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 54 341 IPR030381 GO:0005525
Vvi19g0240 821 SMART dynamin_3 34 268 IPR001401 GO:0003924|GO:0005525
Vvi19g0240 821 PRINTS Dynamin signature 160 177 IPR022812 -
Vvi19g0240 821 PRINTS Dynamin signature 210 228 IPR022812 -
Vvi19g0240 821 PRINTS Dynamin signature 57 75 IPR022812 -
Vvi19g0240 821 PRINTS Dynamin signature 82 99 IPR022812 -
Vvi19g0240 821 PRINTS Dynamin signature 229 245 IPR022812 -
Vvi19g0240 821 CDD DLP_1 55 341 IPR001401 GO:0003924|GO:0005525
Vvi19g0240 821 Coils Coil 790 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0240 Vvi-Chr19 2599495 2605072 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0240 - - vvi:100252153 1587.78