Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01828 ATGTTGCTGAATTCATCCTTTGTTTCACTTCATAGTTTCTTCAAACCTCAACAACTACAAAGAACTAATCTTCCTAGTTCAAATGGTTCTCTCCATCCATGTTATGCTACTAGTTCAAATATTTCTCAAAGAAAATCAGTCAATTACCAACCTAATATTTGGAATTACGATACTTTACTATCGTTAAAACACGATTATGCGGATGTCAAGTACGTGAATAGAAGCAGGAGGTTGCAAGAGGAAGTAAGAGGAATGATTAATGAAGAAAATGTGGAAATCTTAGAGTTAATTGAAAATGTGAAACGCTTAGGCCTCAGCTACCACTTTGAAAAGGAGATAAGAGAAGCCCTTGATAGATTTCTATTGTTGGAAGAATATCATGATGCATTTATTGGAAAAAGTCTACATGACACTGCCTTGAAATTTAGGCTCCTCCGAGAATTTGGATATGATGTTTCTGCAGATGTTTTTGAGAGGTTTAAAAACAACACTGGAAATTTTAAGACATGTCTTGTGAAAGATGTACAAGGGATGTTAAGTTTGTATGAGGCATCGTTTATGTCTTATGAAGGAGAAAACATTTTGGATGAAGCAAATTCCTTCACTAGTTTTCACCTTAGAGGAGTCCATGGCAATATAAGCAATTTTCTTTTTGAACAAGTGAGTCATTCATTGGAACTTCCACTACATCGTAGATTTCAAAGACTTGAAGCTAGATGGTACATTGAGTTATATGGAAAAAGAAAAGATGCAAATAAGGTGTTGCTTGAAGCTGCCAAGTTGGATTTCAATATTGTGCAATCAAATCTACAACTAGATCTTATAGAAATGTCAAGGTGGTGGAAGGGAATGGGACTAGCTCCAAAGTTAAGCTTTGGTCGTGACAGACTAATGGAATGCTATTTTTGGGCTGTTGGAATGGCACCATTGGAACCCAAATTCAGTGACCTCCGCAAAGGATTAACTAAAGTATGCTCTTTAATAACTTTAATCGATGACATATATGATATCTATGGAACTTTGGATGAATTAGAGCTTTTCACGATGGCAGTAGAAAGCTGGGATATTAATGCAGTTAACATTCTTCCGGATTACATGAAGATATTCTTTTTAGCCCTCTACAACACTGTCAGTGAATTAGCATACGATGCACTTAAAGAAAATGGATATGACATTCTTCCCTACCTCGTCAAAGCGTGGTCTAATATGTTGAAAGCATTCCTACAAGAAGCAAGATGGTGTGACGATAAACATATGCCAAAATTTGATGAATACCTCAACAATGCATGGGTGTCTGTGTCTGGTGTCGTTTTACTCAACCATACATATTTTCTACTAAATCAAACTATAACGAAGGAAGGGCTTGAACACTTGGAAAATTTCCATTTGTTATTGCAGAGACCCTCCATTATTTTTCGACTTTGCAATGATTTGGCTACTTCATCGGCGGAGTTACAAAGAGGTGAAGTAGCTAATTCAATTATGTGCTACATGAAGGAAAATGGTGTTAATGAGATGGTTGCTCACAAATACATCCATAATTTGCTTAATGAAACTTGGAAGAAGATGAACAAAGATCGAGTTACATATTCAACTTTCCCAAAATATTATCTAGAAACATTAACCAACCTTGCTAGAATTTCTCATTGCACATATCAATATGGAGATGGGTATGGAGCTCTTGATACCATATCACAGAATCGAATAAAAGCATTAATACTTGAACCCATTAATTAA 1737 0.3569 MLLNSSFVSLHSFFKPQQLQRTNLPSSNGSLHPCYATSSNISQRKSVNYQPNIWNYDTLLSLKHDYADVKYVNRSRRLQEEVRGMINEENVEILELIENVKRLGLSYHFEKEIREALDRFLLLEEYHDAFIGKSLHDTALKFRLLREFGYDVSADVFERFKNNTGNFKTCLVKDVQGMLSLYEASFMSYEGENILDEANSFTSFHLRGVHGNISNFLFEQVSHSLELPLHRRFQRLEARWYIELYGKRKDANKVLLEAAKLDFNIVQSNLQLDLIEMSRWWKGMGLAPKLSFGRDRLMECYFWAVGMAPLEPKFSDLRKGLTKVCSLITLIDDIYDIYGTLDELELFTMAVESWDINAVNILPDYMKIFFLALYNTVSELAYDALKENGYDILPYLVKAWSNMLKAFLQEARWCDDKHMPKFDEYLNNAWVSVSGVVLLNHTYFLLNQTITKEGLEHLENFHLLLQRPSIIFRLCNDLATSSAELQRGEVANSIMCYMKENGVNEMVAHKYIHNLLNETWKKMNKDRVTYSTFPKYYLETLTNLARISHCTYQYGDGYGALDTISQNRIKALILEPIN 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01828 578 Gene3D Farnesyl Diphosphate Synthase 51 563 IPR008949 -
Vivi5g01828 578 SFLD Terpene Cyclase Like 1 C Terminal Domain 252 577 IPR034741 -
Vivi5g01828 578 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 50 250 IPR008930 -
Vivi5g01828 578 SFLD Isoprenoid Synthase Type I 252 577 - -
Vivi5g01828 578 Pfam Terpene synthase family, metal binding domain 256 522 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vivi5g01828 578 FunFam Isoprene synthase, chloroplastic 88 251 - -
Vivi5g01828 578 SUPERFAMILY Terpenoid synthases 252 577 IPR008949 -
Vivi5g01828 578 CDD Terpene_cyclase_plant_C1 44 576 IPR044814 GO:0010333|GO:0016102
Vivi5g01828 578 Pfam Terpene synthase, N-terminal domain 53 225 IPR001906 GO:0010333|GO:0016829
Vivi5g01828 578 Gene3D - 91 251 IPR036965 GO:0010333|GO:0016829
Vivi5g01828 578 PANTHER OS04G0344100 PROTEIN-RELATED 43 558 - -
Vivi5g01828 578 FunFam Isoprene synthase, chloroplastic 216 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01828 Vivi-Chr5 67598242 67604200 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01828 K12742 K19968 mtr:25492046 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01828 5 67598242 67604200 Vivi5g01828 5 67598242 67604200 ECH
Vivi2g06839 2 207753762 207756168 Vivi5g01828 5 67598242 67604200 PCT