Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01194 ATGAATCTTGTCAACGTCATGTTGCTCAATTCCTCTTTTATTTCACATGTCACTTTTGCCAAACCTTTGAAACCGGTAGCTCCTAATCTTCTCCACGGTAGAATAATCTTCCCTCGATGCAACGGAACCACCATCAACGTTAACGCTTCTGAAAGAAAATCTGCAAACTACCAACCCAATCTCTGGACTTACGACTTTCTGCAGTCCTTGAAGCATGCATACGCAGATACAAGATATGAGGACAGGGCCAAGCAGCTGCAAGAGGAAGTGAGGAAAATGATAAAGGATGAAAATTCAGATATGTGGCTCAAACTTGAACTCATTAACGATGTGAAACGCTTGGGCCTGAGTTACCATTATGACAAGGAGATAGGAGAAGCCCTTCTCAGGTTTCACTCTTCTGCAACATTTAGTGGCACAATCGTTCACAGAAGCTTGCACGAAACTGCTTTGTGCTTCAGGCTTCTGAGAGAATATGGCTATGATGTCACAGCAGATATGTTTGAGAGGTTCAAGGAGCGCAATGGTCATTTCAAGGCAAGCCTTATGAGTGATGTGAAGGGAATGCTGAGTCTGTACGAGGCATCGTTTCTTGGCTATGAAGGAGAACAGATTTTGGATGATGCCAAGGCCTTCTCTAGCTTCCATCTTAAGAGTGTACTCAGTGAAGGTAGAAGTAATAACATGGTGTTGGAAGAAGTGAATCATGCATTGGAGCTTCCACTCCATCACAGAATCCAAAGGCTGGAAGCCAGGTGGTATATTGAATATTATGCTAAACAAAGAGACTCAAACCGGGTGTTGCTTGAAGCAGCAAAACTTGATTTCAATATTCTGCAGTCAACCCTGCAAAATGATCTCCAAGAAGTGTCAAGGTGGTGGAAGGGAATGGGACTAGCATCAAAGTTAAGCTTCAGCCGAGACAGACTGATGGAATGTTTCTTTTGGGCTGCTGGAATGGTCTTCGAGCCTCAGTTCAGTGATCTCCGCAAAGGTTTAACAAAAGTTGCTTCCTTAATAACCACAATCGATGACGTTTATGATGTGTATGGCACCTTAGAGGAATTAGAGCTTTTCACAGCTGCTGTAGAAAGTTGGGATGTTAAAGCCATTCAAGTTCTCCCTGATTACATGAAGATATGTTTTCTGGCACTGTACAACACTGTCAACGAATTTGCCTATGATGCACTTAAAGAACAAGGACAAGATATTCTACCCTACCTCACCAAAGCATGGTCTGATTTGTTGAAAGCATTCCTACAAGAAGCAAAATGGAGTCGCGACAGACACATGCCAAGATTCAACGATTACCTCAACAATGCATGGGTCTCAGTCTCTGGGGTAGTTCTACTCACCCATGCTTATTTCTTGCTAAACCACAGCATCACAGAAGAGGCACTAGAGTCCTTGGACAGTTACCACTCCCTTTTACAGAATACATCCCTTGTTTTTCGACTTTGCAATGATTTGGGTACATCAAAGGCAGAGTTAGAGAGAGGGGAAGCAGCAAGCTCCATTCTATGTTACAGGCGAGAAAGTGGTGCTAGTGAAGAGGGTGCTTACAAGCACATCTATAGTTTGCTTAATGAAACGTGGAAGAAGATGAACAAAGATCGAGTGTCGCAGTCTCCTTTCCCAAAAGCTTTCGTAGAAACAGCTATGAACCTTGCAAGAATTTCTCACTGCACATACCAGTATGGAGATGGACATGGAGCCCCAGACAGCACTGCCAAAAATCGCATACGATCTTTGATAATTGAACCCATTGCACTTTACGAGACGGAGATTTCCACAAGTTATTAA 1803 0.4315 MNLVNVMLLNSSFISHVTFAKPLKPVAPNLLHGRIIFPRCNGTTINVNASERKSANYQPNLWTYDFLQSLKHAYADTRYEDRAKQLQEEVRKMIKDENSDMWLKLELINDVKRLGLSYHYDKEIGEALLRFHSSATFSGTIVHRSLHETALCFRLLREYGYDVTADMFERFKERNGHFKASLMSDVKGMLSLYEASFLGYEGEQILDDAKAFSSFHLKSVLSEGRSNNMVLEEVNHALELPLHHRIQRLEARWYIEYYAKQRDSNRVLLEAAKLDFNILQSTLQNDLQEVSRWWKGMGLASKLSFSRDRLMECFFWAAGMVFEPQFSDLRKGLTKVASLITTIDDVYDVYGTLEELELFTAAVESWDVKAIQVLPDYMKICFLALYNTVNEFAYDALKEQGQDILPYLTKAWSDLLKAFLQEAKWSRDRHMPRFNDYLNNAWVSVSGVVLLTHAYFLLNHSITEEALESLDSYHSLLQNTSLVFRLCNDLGTSKAELERGEAASSILCYRRESGASEEGAYKHIYSLLNETWKKMNKDRVSQSPFPKAFVETAMNLARISHCTYQYGDGHGAPDSTAKNRIRSLIIEPIALYETEISTSY 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01194 600 FunFam Isoprene synthase, chloroplastic 245 579 - -
Phco9g01194 600 SFLD Terpene Cyclase Like 1 C Terminal Domain - Enzymatic 264 590 - -
Phco9g01194 600 Pfam Terpene synthase family, metal binding domain 269 534 IPR005630 GO:0000287|GO:0010333|GO:0016829
Phco9g01194 600 Coils Coil 76 96 - -
Phco9g01194 600 CDD Terpene_cyclase_plant_C1 52 588 IPR044814 GO:0010333|GO:0016102
Phco9g01194 600 SFLD Isoprenoid Synthase Type I 264 590 - -
Phco9g01194 600 Gene3D Farnesyl Diphosphate Synthase 59 579 IPR008949 -
Phco9g01194 600 SUPERFAMILY Terpenoid synthases 265 589 IPR008949 -
Phco9g01194 600 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 58 262 IPR008930 -
Phco9g01194 600 PANTHER OS04G0344100 PROTEIN-RELATED 51 570 - -
Phco9g01194 600 FunFam Isoprene synthase, chloroplastic 99 264 - -
Phco9g01194 600 Gene3D - 99 264 IPR036965 GO:0010333|GO:0016829
Phco9g01194 600 Pfam Terpene synthase, N-terminal domain 62 238 IPR001906 GO:0010333|GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01194 Phco-Chr9 11447627 11452123 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01194 9 11447627 11452123 Phco9g01194 9 11447627 11452123 ECH
Phco10g01277 10 35055861 35061247 Phco9g01194 9 11447627 11452123 PCT