Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01549 ATGACTCTTGTGAACCTCCCGTTCGTAAGTTCCTCTTTTCTTCCACATCTCACTTTTCCCAAACCTCTCAAACCAGTTGTTCCTAATCTTCTCCAACGTAGGATAATCTTCCCTCGCTTCAACGCAACCACCACAAACGTTAACGTTTCCGAAAGAAAATCTGCAAACTTCCAACCCAACATCTGGACTTACGACTTTCTGCAGTCCTTGAAGCATGTCTACGCTGATACAAGATACGAGGTCAGGGCCAAGATGTTGCAGGAGGAAGTGAGGAGAATGATAAAAGATGAAAGTTCAGATATATGGCACAAACTTGAACTCATTAACGATGTGAAACGCTTGGGACTGAGCTACCATTATGACAAGGAGATAGCAGAAGCCCTTCTTTGGTTTCACTCTTCTGCAAGATTTAATGCCACAATCGTTAACAGAAGTTTGCATGAAACTGCTATGTGCTTCAGGCTTCTCAGAGAATATGGCTATGATGTCAATGCAGATATATTTGAGAGGTTTAAGGAGGAGAATGGTAATTTCAAGGCAAGCCTTGTGAGTGATGTGAAGGGAATGCTGAGTCTGTACGAGGCATCGTTTCTTGGGTACGGAGGAGATAAGATTTTGGATGAGGCCATGGTGTTCTCTAGATTCCATCTTAGGGTTGCCCTCAACAAAGGTGAAAGCAGTAACATGGTTTTGGAAGAAGTGAATCATGCATTGGAGCTTCCACTCCATCACAGAACCCAAAGGCTGGAAGCAAGGTGGTATATTGAATCTTATGCTAAAAGAACAGACTCAAATCGATTTCTGCTTGAAGCAGCAAAGCTTGATTTCAATATTGTGCAGTCAACAATGCAAAATGATCTCCAACAAATGTCAATGTGGTGGAGGAGAATGGGACTGGCCTCAAAGTTAAGCTTCAGCCGAGACAGGCTTATGGAATGCTTCTTTTGGTCTGTTGGAATGGGCTTTGAGCCTCAGTTCAATGAGCTCCGAAAAGGCATAACAAAAGTTATTTCCTTATTAACTACAATCGATGACGTTTATGATGTCTATGGCACCTTAGATGAATTAGAACTTTTCACAACATCTGTAGAAAGTTGGGATGTTAAAGCAATTGAAGTTCTCCCTGATTACATGAAGATATGCTTTCTGGCACTGTACAACACTGTCAATGAATTTGCCTACGATGCTCTTAAAGAACACGGACAAAATATTCTACCCTACCTCACCAAAGCATGGTGTGATTTGTTGAAAGCATTCCTACAAGAAGCCAAATGGAGTCACGACAAACACTTGCCAACACTCGAGGATTACCTCAACAATGCATGGGTCTCATCTTCCGGCGTAGTTATACTCACCCATGCTTTTTTCTTACTAAACCAAAACATCACAAAAGAGGCACTTGAATCCTTGAACATTTTCCACTCCCTGTTACTGAAACCATCCATTATTCTTCGACTTTGCAATGATTTGGGTACATCAAAGGCAGAGTTAGAGAGAGGTGAAGCAGCAAGCTCCATTGTATGTTACATGCGAGAAAGTGGTGCTAGTGAAGAGAGCGCTTACAAGCATGTCCATAGTTTACTTAATGAAACGTGGAAGGAGATGAACATTGATAGAGTGTCACAGTCTCCTTTCCCAAAAGTTTTCATAGAAAGAACTATGAACCTTGGAAGAATTTCCCAGTGCATGTATCAGTATGGAGATGGACATGGAGCACCAAATAGCACTGCCAATAATCTTATACGATCCTTGATAATTGAACCCATTGCACTTTACGAGATGGAGACCTTTCCACAAGTTGCTTATTAA 1809 0.4157 MTLVNLPFVSSSFLPHLTFPKPLKPVVPNLLQRRIIFPRFNATTTNVNVSERKSANFQPNIWTYDFLQSLKHVYADTRYEVRAKMLQEEVRRMIKDESSDIWHKLELINDVKRLGLSYHYDKEIAEALLWFHSSARFNATIVNRSLHETAMCFRLLREYGYDVNADIFERFKEENGNFKASLVSDVKGMLSLYEASFLGYGGDKILDEAMVFSRFHLRVALNKGESSNMVLEEVNHALELPLHHRTQRLEARWYIESYAKRTDSNRFLLEAAKLDFNIVQSTMQNDLQQMSMWWRRMGLASKLSFSRDRLMECFFWSVGMGFEPQFNELRKGITKVISLLTTIDDVYDVYGTLDELELFTTSVESWDVKAIEVLPDYMKICFLALYNTVNEFAYDALKEHGQNILPYLTKAWCDLLKAFLQEAKWSHDKHLPTLEDYLNNAWVSSSGVVILTHAFFLLNQNITKEALESLNIFHSLLLKPSIILRLCNDLGTSKAELERGEAASSIVCYMRESGASEESAYKHVHSLLNETWKEMNIDRVSQSPFPKVFIERTMNLGRISQCMYQYGDGHGAPNSTANNLIRSLIIEPIALYEMETFPQVAY 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01549 602 Pfam Terpene synthase, N-terminal domain 61 238 IPR001906 GO:0010333|GO:0016829
Viun11g01549 602 FunFam Isoprene synthase, chloroplastic 99 264 - -
Viun11g01549 602 FunFam Isoprene synthase, chloroplastic 243 579 - -
Viun11g01549 602 SFLD Terpene Cyclase Like 1 C Terminal Domain - Enzymatic 264 590 - -
Viun11g01549 602 PANTHER OS04G0344100 PROTEIN-RELATED 51 570 - -
Viun11g01549 602 CDD Terpene_cyclase_plant_C1 52 588 IPR044814 GO:0010333|GO:0016102
Viun11g01549 602 SFLD Isoprenoid Synthase Type I 264 590 - -
Viun11g01549 602 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 58 262 IPR008930 -
Viun11g01549 602 Gene3D - 99 264 IPR036965 GO:0010333|GO:0016829
Viun11g01549 602 Pfam Terpene synthase family, metal binding domain 269 534 IPR005630 GO:0000287|GO:0010333|GO:0016829
Viun11g01549 602 SUPERFAMILY Terpenoid synthases 265 589 IPR008949 -
Viun11g01549 602 Gene3D Farnesyl Diphosphate Synthase 59 576 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01549 Viun-Chr11 31762130 31768141 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01549 K12742 K19968 gmx:100782452 868.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01549 11 31762130 31768141 Viun11g01549 11 31762130 31768141 ECH
Viun5g03038 5 41558738 41565237 Viun11g01549 11 31762130 31768141 PCT