Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0248 ATGTCTGTTCCACTATCAGTCTCAGTCACTCCTATACTAAGCCAGAGGATTGATCCTGAGGTGGCTCGCCACGAAGCCACATATCATCCTAACTTCTGGGGTGATCGTTTCCTCCACTACAATCCTGATGATGATTTCTGTGGAACCCATGCTTGTAAAGAACAACAAATTCAAGAACTGAAAGAAGAAGTGCGGAAGAGCCTGGAAGCTACTGCTGGGAACACTTCACAGCTGCTGAAGTTGATAGATTCCATCCAACGCTTGGGATTGGCTTACCACTTTGAAAGGGAGATTGAAGAAGCATTGAAGGCCATGTATCAAACTTATACTCTGGTTGATGATAATGATCACCTCACTACAGTTTCCCTTCTGTTCCGACTACTAAGACAGGAAGGTTACCACATTCCATCAGATGTATTTAAGAAGTTCATGGATGAGGGAGGCAACTTCAAGGAATCATTGGTGGGTGACTTACCAGGCATGCTAGCTTTATATGAAGCTGCACATTTAATGGTGCATGGAGAAGACATACTAGATGAAGCCCTGGGTTTCACCACTGCTCACCTTCAGTCCATGGCAATTGATTCAGATAATCCTCTCACAAAACAAGTGATTCGTGCTCTAAAGCGCCCGATTCGCAAGGGCTTACCAAGGGTGGAGGCAAGGCATTACATTACCATCTACCAAGAAGACGATTCACATAATGAATCTTTACTCAAGCTTGCAAAGTTGGATTACAACATGTTGCAGTCACTCCACAGGAAAGAGCTAAGTGAGATCACTAAGTGGTGGAAAGGTTTAGACTTTGCGACAAAGCTACCTTTTGCGAGGGACAGGATAGTGGAAGGCTACTTTTGGATCTTGGGAGTGTACTTTGAACCCCAATATTACCTTGCTAGAAGGATCTTAATGAAAGTATTCGGGGTGCTATCCATTGTAGATGATATATATGATGCGTATGGGACATTTGAAGAACTCAAACTCTTTACAGAAGCAATTGAGAGATGGGATGCCAGCAGCATAGATCAACTGCCAGATTATATGAAGGTGTGTTATCAGGCTCTCTTAGATGTCTATGAAGAAATGGAGGAAGAGATGACGAAGCAAGGAAAACTGTACCGTGTTCACTACGCACAAGCAGCGTTAAAAAGGCAAGTCCAAGCCTACCTTCTTGAAGCCAAATGGTTGAAGCAAGAATATATACCAAGAATGGATGAGTACATGAGCAACGCGCTGGTAAGCTCTGCCTGCTCTATGCTTACAACCACATCTTTCGTCGGTATGGGAGATATAGTAACCAAGGAGGCCTTCGATTGGGTTTTCAGTGACCCTAAGATGATTAGAGCTTCAAACGTCATTTGCAGGCTTATGGATGACATAGTTTCCCATGAGTTTGAGCAAAAAAGAGGGCATGTTGCCTCAGCCGTAGAATGCTACATGAAGCAATATGGGGTTTCAAAGGAAGAAGCTTATGATGAGTTCAAGAAGCAAGTAGAGAGTGCATGGAAGGATAATAATGAGGAGTTCCTGCAACCTACAGCAGTGCCAGTTCCACTCCTCACCCGTGTTCTGAATTTTAGCCGGATGATGGACGTCTTGTACAAGGACGAAGATGAGTACACGCTGGTTGGACCATTGATGAAAGATCTGGTTGCAGGGATGCTCATAGATCCTGTGCCAATGTAA 1686 0.4401 MSVPLSVSVTPILSQRIDPEVARHEATYHPNFWGDRFLHYNPDDDFCGTHACKEQQIQELKEEVRKSLEATAGNTSQLLKLIDSIQRLGLAYHFEREIEEALKAMYQTYTLVDDNDHLTTVSLLFRLLRQEGYHIPSDVFKKFMDEGGNFKESLVGDLPGMLALYEAAHLMVHGEDILDEALGFTTAHLQSMAIDSDNPLTKQVIRALKRPIRKGLPRVEARHYITIYQEDDSHNESLLKLAKLDYNMLQSLHRKELSEITKWWKGLDFATKLPFARDRIVEGYFWILGVYFEPQYYLARRILMKVFGVLSIVDDIYDAYGTFEELKLFTEAIERWDASSIDQLPDYMKVCYQALLDVYEEMEEEMTKQGKLYRVHYAQAALKRQVQAYLLEAKWLKQEYIPRMDEYMSNALVSSACSMLTTTSFVGMGDIVTKEAFDWVFSDPKMIRASNVICRLMDDIVSHEFEQKRGHVASAVECYMKQYGVSKEEAYDEFKKQVESAWKDNNEEFLQPTAVPVPLLTRVLNFSRMMDVLYKDEDEYTLVGPLMKDLVAGMLIDPVPM* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0248 561 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 29 234 IPR008930 -
Vvi19g0248 561 Gene3D - 73 234 IPR036965 GO:0010333|GO:0016829
Vvi19g0248 561 SFLD Terpene Cyclase Like 1 C Terminal Domain - Enzymatic 234 560 - -
Vvi19g0248 561 Pfam Terpene synthase, N-terminal domain 33 208 IPR001906 GO:0010333|GO:0016829
Vvi19g0248 561 FunFam Isoprene synthase, chloroplastic 209 549 - -
Vvi19g0248 561 Gene3D Farnesyl Diphosphate Synthase 30 549 IPR008949 -
Vvi19g0248 561 PANTHER OS04G0344100 PROTEIN-RELATED 21 542 - -
Vvi19g0248 561 Pfam Terpene synthase family, metal binding domain 239 504 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vvi19g0248 561 CDD Terpene_cyclase_plant_C1 23 558 IPR044814 GO:0010333|GO:0016102
Vvi19g0248 561 SUPERFAMILY Terpenoid synthases 234 559 IPR008949 -
Vvi19g0248 561 FunFam Isoprene synthase, chloroplastic 73 234 - -
Vvi19g0248 561 SFLD Terpene Cyclase Like 1 C Terminal Domain 234 560 IPR034741 -
Vvi19g0248 561 Coils Coil 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0248 Vvi-Chr19 2667926 2670239 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0248 K15803 - vvi:100255553 1132.47