Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00882 ATGACTCTTGTGAACCCAACGTTACTCAATTCCTCTTTTACTCCACATCTCACTTTTCCCAAACCTCTGAAACCAGTAGCTCCTATTCTTCTCCAACGTAGGATAATCTTTCCTCGCTACAACGCAATCACCGCAAACGTTAAGGTTTCTGAAAGAAAATCAGCAAACTACCAACCCAACCTCTGGACTTACGACTTTCTGCAGTCCTTGAAGCATGCCTACGCTGATATAAGATACGAGGACAGAGCCAAGATGTTGCAGGAGGAAGTGAGGAGAATGATAAAGGATGAAAGTTCAGACATATGGCTCAAACTTGAACTCATTAACGATGTGAAACGATTGGGTCTGAGTTACCATTATGACAAGGAGATAGGTGAAGCCCTTCTTCGGTGTCACTCTTCTGCAGGATTCAGTAGCACATTCGTTAACAGAAGTTTGCATGAAACTGCTTTGTGCTTTAGGCTTCTCAGAGAATATGGCCATGATGTCTCAGCAGGTACTATAGCTTCACGTGTGTACTTATTTGATCATGTAGATATATTTGAGAGGTTTAAGGAGGAGAATGGTAATTTCAAGGCAAGCCTTGTGAGCGATGTGAAGGGAATGCTGAGTCTGTACGAGGCATCGTTTCTTGGATACGAAGGAGAGAAGATTTTGGATGAGGCCATGGTCTTCTCTAGCTTCCATCTTAGGGTTGCCCTCAACGAAGGTAAAGGCAGTAACATGCTTTTGGAACAAGTGAATCATGCATTGGAGCTTCCACTCCATCACAGAATTCAAAGGCTGGAAGCAAGGTGGTCCATTGAATCTTATGCTAAAAGAACAGACTCAAATCGATTTCTGCTTGAAGCAGCAAAGCTTGATTTCAATATTGTGCAGTCAACAATGCAAAACGATCTCCAACAAATGTCAAGGTGGTGGAGGGGAATGGGACTGGCCTCAAAGTTAAGCTTCAGCCGAGACAGACTTATGGAATGTTTCTTTTGGACTGTTGGAATGGTCTTCGAGCCTCAGTTCAGTGATCTCCGTAAAGGCTTAACAAAAGTTACTTCCTTAATAACTACAATCGATGACGTTTATGATGTCTATGGCACCTTAGAAGAATTAGAACTTTTCACTGCAGCTGTGGAAAGTTGGGATGTTAAAGCAGTTCAAGTTCTCCCTGATTACATGAAGATATGTTTTCTGGCACTGTACAACACTGTCAACGAATTTGCCTATGATGCCCTTAAGGAACATGGACAAGATATTTTACCCTACCTCACCAAAGCAGTGCAAGCCAAATGGAGTCGCGACAGACACTTGCCAAGATTCGAGGATTACATCAACAATGCATGGGTCTCAGTCTCCGGGGTGGTTATACTCACCCATGCTTATTTCTTACTAAACCAAAGCATTACAAAAGAGGCACTTCAATCCTTGCACAATTACCACTCCTTGTTACAGAAACCATCCCTTATTTTTCGACTTTGCAATGATCTGGGCACATCAAAGGCAGAGTTAGAGAGAGGTGAAGCAGCAAGCTCCATTGTATGTTTCATGCGAGAAAGTGGTGCTAGTGAAGAGGGTGCTTACAAGCACATCCATAGTTTGCTTAACGAAACGTGGAAGAAGATGAACAAAGATAGAGTGTCACAGTCTCCTTTCCCTAAAGCTTTCGTAGAAACAGCCGTGAACCTTGGAAGAATTTCTCAGTGCACATATCAGTATGGAGATGGACATGGAGCCCCAGATAGCACTGCCAAGAATCGCATACTATCTTTGATAATTGAACCCATTGCACTTTACGAGACGGAGGCATTACAACAAGTTGTTTATTAA 1821 0.4272 MTLVNPTLLNSSFTPHLTFPKPLKPVAPILLQRRIIFPRYNAITANVKVSERKSANYQPNLWTYDFLQSLKHAYADIRYEDRAKMLQEEVRRMIKDESSDIWLKLELINDVKRLGLSYHYDKEIGEALLRCHSSAGFSSTFVNRSLHETALCFRLLREYGHDVSAGTIASRVYLFDHVDIFERFKEENGNFKASLVSDVKGMLSLYEASFLGYEGEKILDEAMVFSSFHLRVALNEGKGSNMLLEQVNHALELPLHHRIQRLEARWSIESYAKRTDSNRFLLEAAKLDFNIVQSTMQNDLQQMSRWWRGMGLASKLSFSRDRLMECFFWTVGMVFEPQFSDLRKGLTKVTSLITTIDDVYDVYGTLEELELFTAAVESWDVKAVQVLPDYMKICFLALYNTVNEFAYDALKEHGQDILPYLTKAVQAKWSRDRHLPRFEDYINNAWVSVSGVVILTHAYFLLNQSITKEALQSLHNYHSLLQKPSLIFRLCNDLGTSKAELERGEAASSIVCFMRESGASEEGAYKHIHSLLNETWKKMNKDRVSQSPFPKAFVETAVNLGRISQCTYQYGDGHGAPDSTAKNRILSLIIEPIALYETEALQQVVY 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00882 606 FunFam Isoprene synthase, chloroplastic 254 583 - -
Vian5g00882 606 SFLD Isoprenoid Synthase Type I 277 594 - -
Vian5g00882 606 SUPERFAMILY Terpenoid synthases 278 593 IPR008949 -
Vian5g00882 606 Gene3D Farnesyl Diphosphate Synthase 59 583 IPR008949 -
Vian5g00882 606 Gene3D - 99 277 IPR036965 GO:0010333|GO:0016829
Vian5g00882 606 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 58 275 IPR008930 -
Vian5g00882 606 Pfam Terpene synthase, N-terminal domain 62 251 IPR001906 GO:0010333|GO:0016829
Vian5g00882 606 CDD Terpene_cyclase_plant_C1 52 592 IPR044814 GO:0010333|GO:0016102
Vian5g00882 606 PANTHER OS04G0344100 PROTEIN-RELATED 51 574 - -
Vian5g00882 606 FunFam Isoprene synthase, chloroplastic 99 277 - -
Vian5g00882 606 Pfam Terpene synthase family, metal binding domain 282 538 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vian5g00882 606 SFLD Terpene Cyclase Like 1 C Terminal Domain 277 594 IPR034741 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00882 Vian-Chr5 29548203 29552143 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00882 K12742 K19968 gmx:100782452 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00882 5 29548203 29552143 Vian5g00882 5 29548203 29552143 ECH