LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g00230	ATGTTGCTAAATTCAACTTTTGTTTCACTTCCTAGTTTCTTCAAACCTCATCAACTACCAAAAACTAAACTTCCTAGTTTAAATGGTTCTCTCCTTTCATGTTATGCTACTAGTTCAAATATTTCTCAAAGAAAGTCAGTCAATTATCAACCTAATATTTGGAATTACGATAGTTTACTATCGTTAAAACACGATTATGCGGATGTCCAGTACGTGAATAGGAGCAAGAGATTGCAAGAGGAAGTAAGAAGAATGATTAATGATGAAAATGAAGAAATCTTAGAGTTAATAGAAAATGTGAAACACTTAGGCCTCAGCTACCACTTTGAAAAGGAGATAAGAGATGCACTTGATAGATTTTTGTCTTTGGAAAAATATGGTGATAAAGTTATTAAAGAAAGTCTTCATGAAACTGCCTTGAGATTTAAGCTTCTTCGAGAATTTGGATATGATATTTCTGCAGATGTTTTTGAGAGGTTTAAAGACCACACTGGAAATTTTAAGGCATGTCTTGTGGAAGATGTAAAAGGGATGCTAAGTTTGTATGAGGCGTCGTTTATGTCTTATGAGGGAGAAAATATTTTGGATGAGGCAAATTCCTTCACAAACTTCCACCTTAGTGGAGTTCATGATGATATAAGCAATTTTCTCTTTGAACAAGTGAATCATTCATTGGAGCTTCCACTGCATCGTAGATTTCAAAGACTTGAAGCTAGATGGTATATTGAGTTATATGGAAAAAGAAAGGATGCAAATAAGGTGTTGCTTGAAGCTGCCGAATTGGATTTCAACATTGTGCAATCAAATCTACAACAAGATCTTATAGAAATGTTGAGGTGGTGGAACGGAATGGGACTAGCTCCAAGGTTAAGCTTTGGTCGTGACAGACTAATGGAATGCTTTTTTTGGGCTGTTGGAATGGCGCCATTGGAGCCCAAATACTGTGATATCCGCAAAGCTTTAACTAAAGTAGGTTGTTTAATAACTTTAATCGATGACATATATGATATTTATGGCACTTTGGATGAATTAGAGCTTTTCACAACGGCAGTAGAAAGTTGGAATATTGATGCAGTTAAAATTCTTCCGGAGTACATGAAGATATTCTTTTTAGCACTCTACAACACTGTCAATGAATTAGGATACGATGCACTTAAAGAAAATGGACATGACATCCTTCCCTACCTCGTCAAAGCGTGGTCTAATATGTTGAAAGCATTCCTACAAGAAGCAAGGTGGTGTGATGAGAAACACATGCCAAAGTTTGATGACTACCTCAACAACGCATGGGTGTCTGTGTCTGGTGTTGTTTTACTCACACATGCCTATTTTATACTAAATCATACCACAACGAAGGAAGGGCTTGAAAACTTGGAAAATTGTCGTTTGTTATTGGAGAGACCCTCCATTATTTTTCGACTTTGCAATGATTTGGCTACTTTATCGGCGGAGTTACAAAGAGGTGAAACTGTTAATTCAATTACGTGTTACATGAAAGAAAATGGTGTTAGTCAGATGGTTGCTCACAGATACATCCATAATTTTCTTAATGAAACTTGGAAGAAGATGAACAAAGATCGAGTTACATATTCAACTTTTCCAAAACATTTTCTAGAAACATTAACCAACCTTGCTAGAATTTCTCATTGCACGTATCAATATGGAGATGGGCATGGAGCTCCTGATACCATATCAAAGAATCGAATAAAGGCCTTAATACTTGAACCCGTTAATTAA	1737	0.3598	MLLNSTFVSLPSFFKPHQLPKTKLPSLNGSLLSCYATSSNISQRKSVNYQPNIWNYDSLLSLKHDYADVQYVNRSKRLQEEVRRMINDENEEILELIENVKHLGLSYHFEKEIRDALDRFLSLEKYGDKVIKESLHETALRFKLLREFGYDISADVFERFKDHTGNFKACLVEDVKGMLSLYEASFMSYEGENILDEANSFTNFHLSGVHDDISNFLFEQVNHSLELPLHRRFQRLEARWYIELYGKRKDANKVLLEAAELDFNIVQSNLQQDLIEMLRWWNGMGLAPRLSFGRDRLMECFFWAVGMAPLEPKYCDIRKALTKVGCLITLIDDIYDIYGTLDELELFTTAVESWNIDAVKILPEYMKIFFLALYNTVNELGYDALKENGHDILPYLVKAWSNMLKAFLQEARWCDEKHMPKFDDYLNNAWVSVSGVVLLTHAYFILNHTTTKEGLENLENCRLLLERPSIIFRLCNDLATLSAELQRGETVNSITCYMKENGVSQMVAHRYIHNFLNETWKKMNKDRVTYSTFPKHFLETLTNLARISHCTYQYGDGHGAPDTISKNRIKALILEPVN	578

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g00230	578	Pfam	Terpene synthase family, metal binding domain	256	522	IPR005630	GO:0000287\|GO:0010333\|GO:0016829
	Vifa6g00230	578	CDD	Terpene_cyclase_plant_C1	44	576	IPR044814	GO:0010333\|GO:0016102
	Vifa6g00230	578	FunFam	Isoprene synthase, chloroplastic	215	567	-	-
	Vifa6g00230	578	Gene3D	-	91	251	IPR036965	GO:0010333\|GO:0016829
	Vifa6g00230	578	PANTHER	OS04G0344100 PROTEIN-RELATED	43	558	-	-
	Vifa6g00230	578	SUPERFAMILY	Terpenoid cyclases/Protein prenyltransferases	50	250	IPR008930	-
	Vifa6g00230	578	Coils	Coil	79	99	-	-
	Vifa6g00230	578	SUPERFAMILY	Terpenoid synthases	252	577	IPR008949	-
	Vifa6g00230	578	Pfam	Terpene synthase, N-terminal domain	54	225	IPR001906	GO:0010333\|GO:0016829
	Vifa6g00230	578	FunFam	Isoprene synthase, chloroplastic	88	251	-	-
	Vifa6g00230	578	SFLD	Terpene Cyclase Like 1 C Terminal Domain	252	577	IPR034741	-
	Vifa6g00230	578	SFLD	Isoprenoid Synthase Type I	252	577	-	-
	Vifa6g00230	578	Gene3D	Farnesyl Diphosphate Synthase	51	567	IPR008949	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g00230	Vifa-Chr6	99094432	99098534	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g00230	K12742		K19968	mtr:25492046	865.529

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa6g00230	6	99094432	99098534	Vifa6g00230	6	99094432	99098534	ECH
	Vifa1g01897	1	307760583	307762782	Vifa6g00230	6	99094432	99098534	PCT