Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01428 atgtcgtcctccaccttcgccggcgcagacacctccaccGCGTTCCTGGCCACGCCGTCGAAAACCCCGTCGAAGGCGAGCAGCCGGCGGCACCACCAGGACTCCAAGTCCCGCTTCGAGGCGTACAACCGGCTCCAGGGCGCCGCCGTGGCCTTCGGCGAGACGCTGCCGATCCCGGAGATCGTCGCCGTCGGGGGCCAGTCCGATGGGAAGAGCTCCCTCCTGGAAGCGCTCCTCGGCTTCCGTTTCAACGTCCGTGAGGTCGAGATGGGCACTCGCAGACCCCTCATACTCCAAATGGTTCACGACGCTTCCGCTCTCGAACCCCGATGCCGCTTCCAGGAGGAGGATTCAGAAGAGTATGGAAGTCCTGTTGTTTTGGCATCTGCCATTGCAGACATTATAAAGTCCCGAACTGAGGCACTTTTGAAGAAAACCAAGGCAGCAGTTTCTCCTAAGCCAATTGTAATGAGAGCAGAGTATGCACATTGTCCTAACCTTACTATTATTGACACACCTGGGTTTGTTCTTAAGGCAAAGAAGGGTGAACCAGAGAACACGCCTGATGAAATCCTTTCTATGGTGAAGTCCTTGGCTAGTCCTCCTCACCGCATACTCTTGTTCCTTCAGCAAAGTAGTGTGGAGTGGTGCTCCTCGTTGTGGTTGGATTCCATTCGTGATATTGACCCAACATTTAGACGGACAGTGATTGTTGTCTCCAAATTTGATAATCGTCTCAAGGAATTTAGTGACCGGTGGGAAGTGGATCGCTATTTGAGTGCAAGTGGTTACCTTGGAGATGGCACTCACCCCTTTTTTGTGGCCCTGCCAAAGGATAGGGGCAATGTTTCAAATGATGAGTTCCGCAGGCAGATTTCTCAGGTGGACTCAGAGGTTCTTCATCATCTCCGCGACGGTGTCAAAGGAGGTTTTGATGAAGAAAAGTTCAAGTCCTATATTGGCTTTGGCCGTCTGAGAGATTTTTTAGAGTCTGAGCTTCAGAAGAAATACAAAGAAGCTGCCCCAGCAACACTTGCTTTGCTTGAGCAACGCTGCAGTGAAGTGACTTCTGAACTTGCTAGAATGGATTCAAAAATACAGGCCACTTCCGATGTTTCCCATCTCAGGAAATATGCGATGCTGCACGCGGCTTCTATCAGCAACCATGTGGGTGCATTGATTGACGGTGCAGCAGATCCTTCCCCTGAGCAGTGGGGAAAATCAACAGTAGAAGAAAGGTCACAAAGTGGCATTGGGGTTTGGCCTGGTGTCATTACCGAAGTAAATCCGCCCAATGCTACTCTTCGTCTTTATGGAGGAGCTGCATTCGAGAGGGTGATGCATGAGTTTCGCTGTGCTGCATATTCCATAGAATGCCCTTCAGTGTCAAGGGAGAAGGTTGCAAATATATTACTTGCCCACGCTGGCCGTGGTGGGGGAAGAGGAATAACAGAGGCTGCTGCAGAGATTGCTCGAGCTGCTGCTAAATCATGGCTTGCTCCTCTTCTTGACACTGCTTGTGACCGGCTTGCTTTCGTCTTAGGAAGTTTATTTGATTTGGCTATAGAAAGAAACCGTAGTCATGATTCAGAATGTGGGGTTCAAGGGGGAAACATGGATGGCTATGTAGGATTCCACGCTGCTTTAAGGTGCGCTTACAATCGCTTCATAGGGGATCTAGCTAAGCAGTGCAAGCAACTTGTTAGACACCACCTTGATTCAGTTACTAGTCCATACTCACAGGTTTGCTACTTTAATGACTTCCAACCATGTTCTGGCCTAAATGCACCCTCTTATAACAAATTCAGCCAGGCTTCAGCCTCTTCATTTTTCCTTGAGTTGAGTGATACTAGTTCAGCTTCCCATGATGTAAGGAGGGATCAGGAAAACATACCTCCAGAAAAGAATGCACAAGAAACCACACCAGGTAAAGCAGCAGAAGCTAGAGATGCTTTGAGAGAAAGCCACATAACTATCCCTGAGACCCCATCCCCTGATCAGCCAGGTGATGCAGTATATGGGGTGGTTAAAAAGGAGCTTGGAATCTGCAATGACATAGGACCAAGAAAGAGAGCGTCCAGAATGGCAGGGAATAACAAAAATTCTGACTATAGAATGCAAAATGGTGGCATTTTATTTGGAAATGGGGAGAGATCAGGTTCAGCTTACTCAGAAATCTGTTCATCAGCTGCCCAGCATTTTGCACGTATTCGTGAAGTTCTTGTTGAAAGAGGTGTGACATCAACATTAAATTCTGGATTCCTAACCCCTTGTCGAGATCGACTATTCGTGGCTCTGGGGTTAGATTTATTTGCTGTGAACGATGAGAAATTCATGGACATGTTTGTTGCTCCTGGTGCCATAGATGTGCTACAAAGTGAACGAGAGTCTCTTATGAAGCGTCAAAAGATACTCCAATCTTGCTTGAATGAGTTTAAAAACGTTGCTCGTGCACTTTGA 2460 0.472 MSSSTFAGADTSTAFLATPSKTPSKASSRRHHQDSKSRFEAYNRLQGAAVAFGETLPIPEIVAVGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDASALEPRCRFQEEDSEEYGSPVVLASAIADIIKSRTEALLKKTKAAVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILLFLQQSSVEWCSSLWLDSIRDIDPTFRRTVIVVSKFDNRLKEFSDRWEVDRYLSASGYLGDGTHPFFVALPKDRGNVSNDEFRRQISQVDSEVLHHLRDGVKGGFDEEKFKSYIGFGRLRDFLESELQKKYKEAAPATLALLEQRCSEVTSELARMDSKIQATSDVSHLRKYAMLHAASISNHVGALIDGAADPSPEQWGKSTVEERSQSGIGVWPGVITEVNPPNATLRLYGGAAFERVMHEFRCAAYSIECPSVSREKVANILLAHAGRGGGRGITEAAAEIARAAAKSWLAPLLDTACDRLAFVLGSLFDLAIERNRSHDSECGVQGGNMDGYVGFHAALRCAYNRFIGDLAKQCKQLVRHHLDSVTSPYSQVCYFNDFQPCSGLNAPSYNKFSQASASSFFLELSDTSSASHDVRRDQENIPPEKNAQETTPGKAAEARDALRESHITIPETPSPDQPGDAVYGVVKKELGICNDIGPRKRASRMAGNNKNSDYRMQNGGILFGNGERSGSAYSEICSSAAQHFARIREVLVERGVTSTLNSGFLTPCRDRLFVALGLDLFAVNDEKFMDMFVAPGAIDVLQSERESLMKRQKILQSCLNEFKNVARAL 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01428 819 PANTHER DYNAMIN 35 818 IPR022812 -
Cca04g01428 819 PANTHER DYNAMIN-LIKE PROTEIN C 35 818 - -
Cca04g01428 819 Gene3D - 25 394 IPR027417 -
Cca04g01428 819 CDD DLP_1 56 342 IPR001401 GO:0003924|GO:0005525
Cca04g01428 819 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 350 IPR027417 -
Cca04g01428 819 MobiDBLite consensus disorder prediction 1 38 - -
Cca04g01428 819 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 55 342 IPR030381 GO:0005525
Cca04g01428 819 Pfam Dynamin family 61 241 IPR045063 -
Cca04g01428 819 MobiDBLite consensus disorder prediction 1 24 - -
Cca04g01428 819 SMART dynamin_3 35 269 IPR001401 GO:0003924|GO:0005525
Cca04g01428 819 Coils Coil 345 365 - -
Cca04g01428 819 PRINTS Dynamin signature 58 76 IPR022812 -
Cca04g01428 819 PRINTS Dynamin signature 83 100 IPR022812 -
Cca04g01428 819 PRINTS Dynamin signature 161 178 IPR022812 -
Cca04g01428 819 PRINTS Dynamin signature 230 246 IPR022812 -
Cca04g01428 819 MobiDBLite consensus disorder prediction 621 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01428 Cca-Chr4 19009496 19015373 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01428 - - pvu:PHAVU_011G158800g 1473.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01428 04 19009496 19015373 Cca04g01428 04 19009496 19015373 ECH