Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g0836 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0837 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0838 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0839 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g1173 Sto9g3543 . . . . . . . . . . . . . . . . . .
Vvi18g0840 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0841 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g1174 Sto9g3544 . . . . . . . . . . . . . . . . . .
Vvi18g0842 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0843 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0844 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g1175 Sto9g3545 . . . . . . . . . . . . . . . . . .
Vvi18g0845 . Acco05g1932 . Accr3g01047 . Adu06g03179 Aed6g0328 . Aev08g0359 Aev07g0859 Ahy17g2530 Ahy16g3519 Aip07g02712 Aip06g03775 . Alju07g1901 . Amo16g3832 Apr9g0413 Apr5g1511 . Arst6g04101 . Bach3g02233 . Bisa05g0239 Bva06g02101 Bva10g00706 Car04g03426 . Cca05g00162 . . Dere05g1625 Dod08g2065 Dod08g2065 . Enph7g0726 . Glsi10g0349 . . Gma14g00732 Gma17g02309 . . . . Lal4g0119 . Lal21g0197 . . . Lan14g0904 . Lan14g0904 . . . . . . . . . . . Lele25g0878 Lele26g0890 Lele27g1201 Lele28g0871 . . Mal1g5763 . . Mepo4g00274 . Mesa1g00321 . Mibi08g1665 Mtr1g0499 . . . . Phco2g00271 . Prci2g1371 . . . Pste8g00971 . . Pte3g01308 Pte2g01158 . . . Pvu1g0236 . Rops9g02208 . Seca4g01471 . Spst8g02171 Ssu5g0264 . Sto5g1176 Sto9g3546 Tpr1g3670 . . Trre1g00346 Tsu01g00417 . . Vian7g00715 . . . . . Viun8g00349 . Vivi4g05600 Vra6g1852 .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi18g0836 Chr18 8615519 8615965 -
Vvi Vvi18g0837 Chr18 8617092 8617556 -
Vvi Vvi18g0838 Chr18 8625142 8627490 +
Vvi Vvi18g0839 Chr18 8634043 8636942 +
Sto Sto5g1173 Chr5 7872836 7875409 +
Sto Sto9g3543 Chr9 34440227 34442486 +
Vvi Vvi18g0840 Chr18 8641104 8643404 -
Vvi Vvi18g0841 Chr18 8646114 8662228 +
Sto Sto5g1174 Chr5 7879088 7881634 +
Sto Sto9g3544 Chr9 34444673 34449045 +
Vvi Vvi18g0842 Chr18 8669776 8672088 +
Vvi Vvi18g0843 Chr18 8674996 8677284 +
Vvi Vvi18g0844 Chr18 8683117 8684287 +
Sto Sto5g1175 Chr5 7884725 7885855 +
Sto Sto9g3545 Chr9 34449384 34450474 +
Vvi Vvi18g0845 Chr18 8692269 8697970 +
Acco Acco05g1932 Chr05 35706806 35712385 -
Accr Accr3g01047 Chr3 11822000 11825817 +
Adu Adu06g03179 Chr06 110047291 110050046 +
Aed Aed6g0328 Chr6 2862935 2867558 -
Aev Aev08g0359 Chr08 1940450 1942173 -
Aev Aev07g0859 Chr07 5876348 5879012 -
Ahy Ahy17g2530 Chr17 120324175 120326332 -
Ahy Ahy16g3519 Chr16 152738432 152740964 +
Aip Aip07g02712 Chr07 111704207 111705899 -
Aip Aip06g03775 Chr06 135495168 135495691 +
Alju Alju07g1901 Chr07 45296060 45300885 -
Amo Amo16g3832 Chr16 150077382 150079911 +
Apr Apr9g0413 Chr9 5716336 5719732 +
Apr Apr5g1511 Chr5 19061916 19064321 +
Arst Arst6g04101 Chr6 109155134 109157369 +
Bach Bach3g02233 Chr3 29250572 29252904 +
Bisa Bisa05g0239 Chr05 3795482 3800051 +
Bva Bva06g02101 Chr06 13924967 13927481 -
Bva Bva10g00706 Chr10 5858807 5861639 +
Car Car04g03426 Chr04 62958318 62960565 +
Cca Cca05g00162 Chr05 3664891 3669956 +
Dere Dere05g1625 Chr05 25952940 25955958 -
Dod Dod08g2065 Chr08 48090503 48093571 +
Dod Dod08g2065 Chr08 48090503 48093571 +
Enph Enph7g0726 Chr7 13211205 13215091 -
Glsi Glsi10g0349 Chr10 2291090 2294227 -
Gma Gma14g00732 Chr14 7382863 7386108 -
Gma Gma17g02309 Chr17 41068251 41071408 +
Lal Lal4g0119 Chr4 726914 729650 +
Lal Lal21g0197 Chr21 1306916 1309722 -
Lan Lan14g0904 Chr14 15601427 15604007 -
Lan Lan14g0904 Chr14 15601427 15604007 -
Lele Lele25g0878 Chr25 5611360 5619919 +
Lele Lele26g0890 Chr26 5700281 5705426 +
Lele Lele27g1201 Chr27 19057062 19062071 -
Lele Lele28g0871 Chr28 5610854 5619583 +
Mal Mal1g5763 Chr1 134704844 134707302 +
Mepo Mepo4g00274 Chr4 4203792 4206225 -
Mesa Mesa1g00321 Chr1 3800433 3802764 -
Mibi Mibi08g1665 Chr08 33248929 33253714 -
Mtr Mtr1g0499 Chr1 5817805 5820357 +
Phco Phco2g00271 Chr2 2153711 2156308 -
Prci Prci2g1371 Chr2 10373165 10376168 +
Pste Pste8g00971 Chr8 5060787 5064770 +
Pte Pte3g01308 Chr3 11198669 11201436 +
Pte Pte2g01158 Chr2 12647422 12650180 +
Pvu Pvu1g0236 Chr1 2030321 2033156 -
Rops Rops9g02208 Chr9 40459507 40462420 +
Seca Seca4g01471 Chr4 23852708 23854744 +
Spst Spst8g02171 Chr8 31112756 31115424 -
Ssu Ssu5g0264 Chr5 5538153 5541113 -
Sto Sto5g1176 Chr5 7888488 7891029 +
Sto Sto9g3546 Chr9 34452250 34454978 +
Tpr Tpr1g3670 Chr1 40848597 40851066 +
Trre Trre1g00346 Chr1 2451668 2453865 -
Tsu Tsu01g00417 Chr01 3469123 3471600 -
Vian Vian7g00715 Chr7 15383246 15385749 +
Viun Viun8g00349 Chr8 2217652 2220480 -
Vivi Vivi4g05600 Chr4 191825938 191828402 +
Vra Vra6g1852 Chr6 35143145 35145371 +