Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01308 ATGGCTCTGCGTCTGAACCAGTTTCAGCAACAACAGCACTATCAAACCCAATCTCAAACACAATCACCGAATTCCAATGCCTTCAGGATTTTACAGACGATTGACGGTCAAATTTCACAGCCAGTCGCCTATGGCAACACTGGCGATTTACAAGATCAAACCCAGCATACTCCGTATATTCCTCAGTTTCATGTTGTTGGGTTTGCACCTGGACCAATTCCTATCGCAGATGGCAGTGATAGCGGGGTAGATTTACAGTGGAATTATGGTTTTGAACCCAAGAGGAAAAGGCTAAAGGAACAAGACTTCCTCGAGAGTGATTCTCAGCTATCTGTTGATTTCTTGCCACCTCCGAGTGTTTCTACAGGATTGGGTTTGTCACTTGACTATAACCATGTGACTTCAACTGGAGAGTCGACCTTGTTGTCACTTATTGCAGATGATGTTGATAGTGAACTTCAGAGACAGGACGCAGAGATTGATAGGTTTCTCGAAGTTCAGGGTGATCAATTGCGCGAAAACATCTTGGAGAAGGTCCAGATTTCACAGTTGCGAAGTATCTCACTTATGGAAGAAAAAATTTATGAAAAACTTCGTGATAAAGAATCACAGGTTGAGAGCATTAATAAGACGACTATGGATCTTGAAGAGCAGGTGGAGCTGCTCAGACTAGAAGCAGAAGCCTGGCAGCAGCAGGCCAGATGCAACGAAAACATGATTGCTGCTCTCAAGTTTAATCTTCAGCAAGTTTTTGTTCAAGGTAGGGATGATAAAGAAGGCTGTGGCGATAGTGAGGTTGACGATACAGCTTCTGGGTGCAATGGGCGCTCCGTGGACTTTCACCTGCTTTACTACAATAACAAGCGAATGAAAGATATGATAACATGTAAAGCTTGCAGGGTCAAAGAAGTATGCATGCTCTTGTTACCATGTAAGCATCTCTGTTTGTGTAGAGAATGTGAAAGTAAGCTTAGTTGTTGCCCCGTCTGTCGGTCCTCTAAATTCATTGGGATGGAGATCTACATGTAA 1029 0.4344 MALRLNQFQQQQHYQTQSQTQSPNSNAFRILQTIDGQISQPVAYGNTGDLQDQTQHTPYIPQFHVVGFAPGPIPIADGSDSGVDLQWNYGFEPKRKRLKEQDFLESDSQLSVDFLPPPSVSTGLGLSLDYNHVTSTGESTLLSLIADDVDSELQRQDAEIDRFLEVQGDQLRENILEKVQISQLRSISLMEEKIYEKLRDKESQVESINKTTMDLEEQVELLRLEAEAWQQQARCNENMIAALKFNLQQVFVQGRDDKEGCGDSEVDDTASGCNGRSVDFHLLYYNNKRMKDMITCKACRVKEVCMLLLPCKHLCLCRECESKLSCCPVCRSSKFIGMEIYM* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01308 342 ProSiteProfiles Zinc finger RING-type profile. 296 331 IPR001841 -
Pte3g01308 342 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 278 342 - -
Pte3g01308 342 Pfam Zinc finger, C3HC4 type (RING finger) 295 332 - -
Pte3g01308 342 PIRSF SBP1_RNase_bind 15 342 IPR017066 -
Pte3g01308 342 Gene3D - 305 332 - -
Pte3g01308 342 Gene3D Death Domain, Fas 170 304 IPR011029 -
Pte3g01308 342 Gene3D - 153 169 - -
Pte3g01308 342 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 92 340 IPR017066 -
Pte3g01308 342 Coils Coil 198 232 - -
Pte3g01308 342 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01308 Pte-Chr3 11198669 11201436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01308 296 332 Miscellaneous Gene Families AT4G39050 45.946 4.62e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01308 K19042 - gmx:100811918 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01308 3 11198669 11201436 Pte3g01308 3 11198669 11201436 RCT