Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0845 ATGGCTATGCCTCACCACCCTTTCCAACAAGAATCCAAGCCCTACAGGAATTTGTACACAAACGAGGGTCAGATTTCGCAGCAAGCCGCCTTCTATAGCACCACTAATTTCCAGGATCAGTCTCATCATCCGCCGTATATCCCTCCCTTTCATGTGGAGGGTTTCGCACCTGGGCCCTTCGCTGCGGCGGACGGAGATGATGGCGGTGGTGAATTGCGATGGAATTATGGGTTGGAATCCAAGAAGAAAAGATTGAAGGAACAGGATTTTCTGGAGAATCATTCGCAAATATCGTCCGTTGATTTTTTGCAACCTCGTTCTGTATCTACTGGGTTAGGTTTGTCACTAGACCATGGTCGAATGGCTTCATCGGGAGATTCCGCATTTATTCATCTCATCGGAGATGACATCGATCTTGAGTTGCAGCGACAGGATGCCGAGATTGATAGGTTTCTTAAAGTTCAGAGTGACCGGATGCGGCAAGCTATCTTAGAGAAGGTTCAGGCTAGCCAACTTCAAACTATGTCGTTATTGGAAGATAAAGTCCTCCGGCAACTCCGTGATAAGGAAGTAGAGGTGGAGAGCATTAACAAGAAGAACATGGAACTTGAAGAGCGGATGGAACAATTGACTGTTGAAGCGGGTGCATGGCAACAGCGGGCAAAATACAATGAAAACATGATCACTGCCCTCAAATTCAGTCTTCAGCGAGTCTATGCTCAGAGCAGAGATAGTAAAGAAGGATGTGGTGACAGTGAGGTAGATGATACAGCTTCTTGCTGCAATGGTCGTGCCATTGACTTCCATTTGCTTTGCAAGGAGAACAATGATATGAGGGAGTTGATGACGTGTAAGGTCTGCAAAGTTAATGGAGTATGCATGCTTTTGTTACCTTGTAAGCACCTTTGCCTCTGTAAAGATTGTGAAAGCAAGTTTAGTTTTTGTCCCCTGTGTCAGTCATCTAAGTTTATTGGTATGGAGGTCTATATGTAA 993 0.4532 MAMPHHPFQQESKPYRNLYTNEGQISQQAAFYSTTNFQDQSHHPPYIPPFHVEGFAPGPFAAADGDDGGGELRWNYGLESKKKRLKEQDFLENHSQISSVDFLQPRSVSTGLGLSLDHGRMASSGDSAFIHLIGDDIDLELQRQDAEIDRFLKVQSDRMRQAILEKVQASQLQTMSLLEDKVLRQLRDKEVEVESINKKNMELEERMEQLTVEAGAWQQRAKYNENMITALKFSLQRVYAQSRDSKEGCGDSEVDDTASCCNGRAIDFHLLCKENNDMRELMTCKVCKVNGVCMLLLPCKHLCLCKDCESKFSFCPLCQSSKFIGMEVYM* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0845 330 CDD mRING-HC-C3HC5_CGRF1-like 283 318 - -
Vvi18g0845 330 Pfam Zinc finger, C3HC4 type (RING finger) 282 320 - -
Vvi18g0845 330 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 265 330 - -
Vvi18g0845 330 ProSiteProfiles Zinc finger RING-type profile. 284 319 IPR001841 -
Vvi18g0845 330 PIRSF SBP1_RNase_bind 6 330 IPR017066 -
Vvi18g0845 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 330 IPR013083 -
Vvi18g0845 330 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 79 328 IPR017066 -
Vvi18g0845 330 Coils Coil 186 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0845 Vvi-Chr18 8692269 8697970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0845 284 320 Miscellaneous Gene Families AT2G21380 48.649 3.45e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0845 K19042 - vvi:100241956 650.203