Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0349 ATGACAGAACCTCTCTTCTCTCTCTGTACAACAATGGCTCTCCCACAGCACCACTTCCAACAACACTACCAACCCCAACCACAACAACCGCAATCGAAACCTTTCCGAAATTTGCAAACAATCGATGGTCAGATGTCGCAGCCGGCGGCCTTCTGTAACCCCGCTGATTTACAAGATCAGTCCAAGCATCCTCCGTACATTCCTCCCTTTCATGTTGTTGGGTTTGCACCCGGTCCAGTTCCTCCTGCAGATGGCAGCGATGGGGGAGCTGATTTACAATGGAATTACGGCTTCGAACCCGAGAGGAAAAGACTTAAAGAACAGGATTTTCTGGAGAACAATTCTCAGATATCTTCCATAGATTTCTTGCAACCCCTATCTGTCTCCACAGGATTGGGCTTGTCACTTGACAATACCCGCATGGCTTCCACTGGAGACTCGGCTTTATTATCTCTCATAGGTGACGATGTTGAACGTGAGTTACAGCAGCAATATGCAGAGATAAATAGGTATCTCAAAGTGCAGGGTGAACGTTTGCGGCAAACTATTTTAGAAAAGGTTCAGGCAACACAACTTCAGAGTATATCAATGATTGAAGAGAAAGTCCTTCAGAAACTTCATGAGAAAGAAGCAGAGGTTGAAAGTATTAATAAGAGAAATATGGAACTTGAAGAGCGAATGGAGCAGTTGACTGTTGAGGCAGGTGCCTGGCAACAGCGAGCCAGGTACAATGAGAACATGATTGCTGCTCTCAAGTTTAATCTTCAGCAAGTATATGTTCAAAGCAGAGATAGCAAAGAAGGATGTGGTGACAGCGAGGTGGATGATACAGCATCATGCTGCAATGGCCGTTCCATCGATTTTCACCTGCTCTCCAAGGAGAACAATGATTTGAAAGAGATGATGACTTGTAAGGCATGCAGAGTCAATGAAGTCAGCATGCTTCTATTACCATGTAAGCATCTTTGCCTCTGTAAAGATTGTGAAAGTAAGCTTAGTTTTTGTCCGTTGTGTCAATCCTCGAAGTTTATTGGCATGGAGGTCTATATGTAA 1053 0.4435 MTEPLFSLCTTMALPQHHFQQHYQPQPQQPQSKPFRNLQTIDGQMSQPAAFCNPADLQDQSKHPPYIPPFHVVGFAPGPVPPADGSDGGADLQWNYGFEPERKRLKEQDFLENNSQISSIDFLQPLSVSTGLGLSLDNTRMASTGDSALLSLIGDDVERELQQQYAEINRYLKVQGERLRQTILEKVQATQLQSISMIEEKVLQKLHEKEAEVESINKRNMELEERMEQLTVEAGAWQQRARYNENMIAALKFNLQQVYVQSRDSKEGCGDSEVDDTASCCNGRSIDFHLLSKENNDLKEMMTCKACRVNEVSMLLLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVYM 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0349 350 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 100 348 IPR017066 -
Glsi10g0349 350 CDD mRING-HC-C3HC5_CGRF1-like 303 338 - -
Glsi10g0349 350 PIRSF SBP1_RNase_bind 22 350 IPR017066 -
Glsi10g0349 350 ProSiteProfiles Zinc finger RING-type profile. 304 339 IPR001841 -
Glsi10g0349 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 350 IPR013083 -
Glsi10g0349 350 Coils Coil 199 240 - -
Glsi10g0349 350 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 285 350 - -
Glsi10g0349 350 Pfam Zinc finger, C3HC4 type (RING finger) 302 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0349 Glsi-ChrGlsi10 2291090 2294227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0349 292 340 Miscellaneous Gene Families AT4G39050 40.816 1.23e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0349 10 2291090 2294227 Glsi10g0349 10 2291090 2294227 ECH