Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3546 ATGCCTCTCCCTAACTCTAAGCAACACTTCAAATCTCTCAGAAATTTGCAAACAATCGATGGTCAGACTCAGATGTCGCGGCCTGTCGCTTACTATAACCCCACTCATTTGCAAGATCAGTCCCATCATCCTCCCTATATTCCTCCTTTTGATCCTGCATTAGTTCATGTGGTTGGGTTTGCACCGGGACCAGTCCCTCCTGCTGCTGCCAGCGATGGTGGAGCTGATTTGAAATGGAATTATGATTTGGAACCAGAGAGGAAAAGACTCAAAGAACAGGATTTTCTGGAGAACAATTCTCAGATATCTTCAGTAGATTTTCTGCAACCACGATCAGTCTCCACTGGATTGGGCTTATCATTTGACAATACCCGCTTGGCTTCTACTGGAGAATCAGCTTTATTGTCACTCATTGGTGATGATATTGATCAAGAATTGCAGCAGCACGATGCAGAGATGGATAGATTTCTCAAAGCGCAGAGTGAACAATTCCAGCAAACTATTCTAGAGAAGGTTCAGGCATCAGAGCTTCAGAGTATATCAATTGTTGAAGACAAAATCCTCCAGAAACTTCAGGAGAAAGAAGCTACGGTACAAAGCATCAATAAGAAGAATATAGAACTGGTGGAGCGCATGGAGCAGTTGAGTGTTGAAGCCGGCGCCTGGCAACAGCGAGCCAAATACAATGAGAACGTGGTTACTGCTCTCAAATTTAATCTTGAACAAGTATATGTTCAAAGCAGAGATAGTAAAGAAGGATGCGGCGACAGTGAGGTAGATGATACAGCTTCCTGCTGCAATGGTCGTAACACGGACTTTCATCTGCTGTCCAAGGAGAACAATGATATGAAAGAGACGATGACATGTAAGGCCTGCAGAGTCAATGAAGTGAGCATGCTGTTATTACCATGTAAGCATCTCTGCCTCTGTAAAGATTGTGAAAGTAAGCTTAGTTTTTGTCCTCTATGTCAATCCTCTAAATTAAGTGGCATAGAGGTCTACATGTAA 1008 0.4315 MPLPNSKQHFKSLRNLQTIDGQTQMSRPVAYYNPTHLQDQSHHPPYIPPFDPALVHVVGFAPGPVPPAAASDGGADLKWNYDLEPERKRLKEQDFLENNSQISSVDFLQPRSVSTGLGLSFDNTRLASTGESALLSLIGDDIDQELQQHDAEMDRFLKAQSEQFQQTILEKVQASELQSISIVEDKILQKLQEKEATVQSINKKNIELVERMEQLSVEAGAWQQRAKYNENVVTALKFNLEQVYVQSRDSKEGCGDSEVDDTASCCNGRNTDFHLLSKENNDMKETMTCKACRVNEVSMLLLPCKHLCLCKDCESKLSFCPLCQSSKLSGIEVYM 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3546 335 Pfam Zinc finger, C3HC4 type (RING finger) 287 325 - -
Sto9g3546 335 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 6 335 IPR017066 -
Sto9g3546 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 335 IPR013083 -
Sto9g3546 335 Coils Coil 191 218 - -
Sto9g3546 335 ProSiteProfiles Zinc finger RING-type profile. 289 324 IPR001841 -
Sto9g3546 335 PANTHER F2G19.2 6 335 - -
Sto9g3546 335 PIRSF SBP1_RNase_bind 6 335 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3546 Sto-Chr9 34452250 34454978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3546 277 325 Miscellaneous Gene Families AT4G39050 40.816 5.27e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3546 K19042 - gmx:100811918 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3546 9 34452250 34454978 Sto9g3546 9 34452250 34454978 ECH