Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0871 ATGCTTTCATTCACGTGGAAGATTACCTTGCAATTTAGTCATAGGAAATGCAGTCGTGTTGCGGATGCATTAGATGGATTGGGAATTACTGCTACTTTTGACATGAACCTTCTTTTTCTCAGGGCAACCATGGCTCTCCCTCAGCGACATCTCCAACAACACTACCAAACCCGACCACTACAACCACAATCGAAATCATTCAGAGCTTTACAAACAGTCGATGGTCAGATGTCACAGCCGGTTGCCTTCTATAATCCAGCTGATTTACAAGATCAGACCCAGCATCCTCCGTATGTTCCTCCTTTTCACGTTGTCGGGTTTGCGCCCGGTACATTTCCTCCTGCTGACGGTAGTGATGGTGGAGCTGATTTGCAATGGAATTACGGGTTAGAAACCGAGAGGAAAAGACTAAAAGAACAGGATTTTCTGGAGAACAATTCTCAGATATCTTCCATAGATTTCCTCCAAACTCGATCGGTCTCGACCGGATTGGGTTTGTCACTTGACAATACCCGCATGGCTTCCACCGGGGACTCGGCTTTACTATCACTCATTGGTGATGATATTGAACGTGAATTACAGCAGCAGGACGCAGAAATACAAAAATATCTCAGAGTGCAGGGTGAACGATTGCGGCAAACAATTATGGAGAAGGTTCAAGCAACTCAACTTCAGAGCATGTCAGTCTTTGAAGACAAAGTCCTACAGAAACTCAACGAGAAAGAAGCAGAGGTTGAAAGCATCAATAAGAGGAACATGGAGCTTGAAGAGCGAATGGAGCAGTTGACAGTCGAAGCAAGTGCTTGGCAACAACGTGCCAGGTACAATGAGAACATGATTGCTGCTCTCAAGTACAATCTTCAGCAAGTATATGCTCAAGGCAGAGATAGCAAAGAAGGATGTGGTGACAGCGAGGTAGACGATACTGCTTCATGCTGCAATGGCGGTTTCATTGATTTTCACCTGCTCTCCAAGGACAGCAATGATGTGAAAGAGATGATGACTTGTAAGCTATGCAGGGTCAATGAAGTTAGCATGCTTTTATTACCCTGTAAACACCTCTGCCTTTGTAAAGATTGTGAAAGTAAGCTTAGTTTCTGCCCCTTATGTCAGTCCTCAAAATTTATTGGCATGGAGGTCTATATGTAA 1149 0.443 MLSFTWKITLQFSHRKCSRVADALDGLGITATFDMNLLFLRATMALPQRHLQQHYQTRPLQPQSKSFRALQTVDGQMSQPVAFYNPADLQDQTQHPPYVPPFHVVGFAPGTFPPADGSDGGADLQWNYGLETERKRLKEQDFLENNSQISSIDFLQTRSVSTGLGLSLDNTRMASTGDSALLSLIGDDIERELQQQDAEIQKYLRVQGERLRQTIMEKVQATQLQSMSVFEDKVLQKLNEKEAEVESINKRNMELEERMEQLTVEASAWQQRARYNENMIAALKYNLQQVYAQGRDSKEGCGDSEVDDTASCCNGGFIDFHLLSKDSNDVKEMMTCKLCRVNEVSMLLLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVYM 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0871 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 382 IPR013083 -
Lele28g0871 382 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 134 380 IPR017066 -
Lele28g0871 382 Coils Coil 231 272 - -
Lele28g0871 382 Pfam Zinc finger, C3HC4 type (RING finger) 334 372 - -
Lele28g0871 382 ProSiteProfiles Zinc finger RING-type profile. 336 371 IPR001841 -
Lele28g0871 382 PIRSF SBP1_RNase_bind 59 382 IPR017066 -
Lele28g0871 382 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 319 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0871 Lele-ChrLele28 5610854 5619583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0871 336 372 Miscellaneous Gene Families AT2G21380 45.946 3.32e-07 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0878 25 5611360 5619919 Lele28g0871 28 5610854 5619583 hybridization
Lele26g0890 26 5700281 5705426 Lele28g0871 28 5610854 5619583 hybridization