Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0878 ATGATGACAGGCTGTCTTGAATTGCTAGGAACAGACATACTTACTGACTTTAACCCCATCCCCCCTGTATTACCACCACTGCTGATCATCTTTATGCTCAAGACATTTCAAGGTTTAAGGGAAAAGTTGCAGGACTCTCGATCCTATCTTTTTATGAGCAAAGATTTGCAATGGATTGTGAATACAAGTCCGTGGACAACCATGGCTCTCTCCCAGCACCATCTCCAACAACACTACCAAACCCAACCACTACAACCACAATCGAAATCATTCAGGGCTTTACAAACAGTAGATGGTCAGATGTCGCAGCCGGTTGCCTTCTATAATCCAGCTGATTTGCAAGATCAGACCCAGCACCCTCCGTATGTTCCTCCTTTTCATGTTGTCGGGTTTGCGCCCGGTCCATTTCCTCCTGCTGACGGTAGGGATGGTGGAGCTTATTTACAATGGAATTACGGGTTAGAACCCGAGAGGAAAAGACTAAAAGAACAAGATTTTCTGGAGAACAATTCTCAGATATCTTCCATAGATTTCCTCCAAACTCGATCGGTCTCCACTGGATTGGGTTTGTCACTTGACAATACCCGCATGGCTTCCTCCGGAGACTCGGCTTTATTATCACTCATTGGTGATGACATTGAACGTGAATTACAGCAGCAGGACGCAGAAATACAAAATTATCTCAAAGTGCAGGGTGAACGATTGCGGCAAACAATTATGGAGAAGGTTCAAACTACTCAACTTCAAAGCATGTCAATTGTTGAAGACAAAGTCCTACAGAAACTTAACGAGAAAGAAGCAGAGGTTGATAGCATCAATAAGAGGAACATGGAACTTGAAGAGCAAATGGAGCTGTTGACTGACGAAGCAAGTGCTTGGCAACAACGTGCCAGATACAATGACAACATGATTGCCGCTCTCAAGTACAATCTTCAGCAGGTATATGCTCAAGGCAGAGATAGCAAAGAAGGATGCGGTGACAGCGAGGTAGACGATACTGCTTCATGCTGCAATGGCCGTTCCATTGATTTTCACCTGCTCTCCAAGGACAACAATGATATGAAAGAGATGATGACTTGTAAGGTATGCAGAGTCAATGAAGTTAGCATGCTTTTGTTACCCTGTAAACACCTCTGCCTTTGTAAAGATTGTGAAAGTAAGCTTAGTTTCTGCCCCTTGTGTCAATCCTCAAAATTTATTGGCATGGAGGAAATCAAAGTTGTGTTGAGGTTTTCGGAAGTTGCAAGCCCATCCTCAATGACTCAAGTGGGCCTGTTAAGACCATTTCAGCGTGCGAATTCGAATCATTTTCCATTTTCGTACTATGTACTGTGTGGGCTAATATGGCGTGAGCGTGACCCTTGCATTGCGTTTGCATTATTCAATGTTGAAGCCTTGAAGGGATCCCTTGCATTATTCATGTTCACAGCTTTTATCCATCTTTTACTGAAATCCCATCTCTCAAATAATAGACAGCATACATATATATTGGTCTGA 1497 0.4322 MMTGCLELLGTDILTDFNPIPPVLPPLLIIFMLKTFQGLREKLQDSRSYLFMSKDLQWIVNTSPWTTMALSQHHLQQHYQTQPLQPQSKSFRALQTVDGQMSQPVAFYNPADLQDQTQHPPYVPPFHVVGFAPGPFPPADGRDGGAYLQWNYGLEPERKRLKEQDFLENNSQISSIDFLQTRSVSTGLGLSLDNTRMASSGDSALLSLIGDDIERELQQQDAEIQNYLKVQGERLRQTIMEKVQTTQLQSMSIVEDKVLQKLNEKEAEVDSINKRNMELEEQMELLTDEASAWQQRARYNDNMIAALKYNLQQVYAQGRDSKEGCGDSEVDDTASCCNGRSIDFHLLSKDNNDMKEMMTCKVCRVNEVSMLLLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEEIKVVLRFSEVASPSSMTQVGLLRPFQRANSNHFPFSYYVLCGLIWRERDPCIAFALFNVEALKGSLALFMFTAFIHLLLKSHLSNNRQHTYILV 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0878 498 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 158 403 IPR017066 -
Lele25g0878 498 Coils Coil 255 296 - -
Lele25g0878 498 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 341 405 - -
Lele25g0878 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 400 IPR013083 -
Lele25g0878 498 Pfam Zinc finger, C3HC4 type (RING finger) 358 396 - -
Lele25g0878 498 ProSiteProfiles Zinc finger RING-type profile. 360 395 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0878 Lele-ChrLele25 5611360 5619919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0878 348 396 Miscellaneous Gene Families AT4G39050 42.857 1.98e-07 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0878 25 5611360 5619919 Lele27g1201 27 19057062 19062071 hybridization
Lele25g0878 25 5611360 5619919 Lele28g0871 28 5610854 5619583 hybridization