Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0197 ATGGCTCTTCCCGAGCACCAATTCCAACGACACCGTCAACCGCAATCACAACCATCAAATTCTTTGAGACATATACATTCAATTGATTTTGACGATCAGATGCCGCAACCTCTCTCCTATTTCAACCCCAACGATTTCCACCATCATCCTTTTCATGTTGTTGGGCTTGCTCCATCTGATGGCAGTGATGGTGGTGCTGATTTGCAATGGAATTATGGTGTGGAGCCTGAGCGAAAAAGACTTATAGAACAGGATTTTCTGGAGAACAATTCTCAGATATCTTGTGTTGATTTTATGCAACCTCAATCTGTATCCACCGGATTGGGTTTGTCACTCGACAATACCCGCATGTCTTCTGCTGAAGACTCCACTTTATTGTCGCTTCTTGGCAGCAATATTGATCGGGAGTTACTGCAGCAGGATGCGGAGATTGATAGATTTCTCAGAGTACAGGGTGAACAATTGAGGAAAACAATTATGGAGAAGGTTCAGGCAACACAACTTCAGAGCATTTCGATCATTGAAGACAGAGTCCTTCAAAAACTCCGTGAGAAAGAAGCTGAGGTTGAAGGCATCAATAAGAGGAACACTGAACTTGAAGAGCGATTGGAGCAGTTGGCTCTTGAAGCAGATGCATGGCAACAGCGAGCCAGATACAATGAGAATATGATTGCTGCTCTGAAGTTTAACCTTGAACAAGTATATGCCCAAAGCAGAGACATTAAAGAAGGATGTGGTGACAGTGAGGTCGATGATACAGCTTCATGCATCAATGGCCGAACTATTCATTTTCATTTGCTCTCCAAAGGGAACAACGATATGAAGGAGATGACGACATGTAAGGCATGCAGAGTCAACGAAGTGACCATGCTTTTATTACCATGCAAGCATCTCTGCCTCTGTAAAGATTGTGAAAGTAAGCTTAGTTTTTGTCCTCTATGTCAATCCTCTAAATTTATTGGCATGGAGGTCTATATGTAA 981 0.4271 MALPEHQFQRHRQPQSQPSNSLRHIHSIDFDDQMPQPLSYFNPNDFHHHPFHVVGLAPSDGSDGGADLQWNYGVEPERKRLIEQDFLENNSQISCVDFMQPQSVSTGLGLSLDNTRMSSAEDSTLLSLLGSNIDRELLQQDAEIDRFLRVQGEQLRKTIMEKVQATQLQSISIIEDRVLQKLREKEAEVEGINKRNTELEERLEQLALEADAWQQRARYNENMIAALKFNLEQVYAQSRDIKEGCGDSEVDDTASCINGRTIHFHLLSKGNNDMKEMTTCKACRVNEVTMLLLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVYM 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0197 326 ProSiteProfiles Zinc finger RING-type profile. 280 315 IPR001841 -
Lal21g0197 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 326 IPR013083 -
Lal21g0197 326 PIRSF SBP1_RNase_bind 3 326 IPR017066 -
Lal21g0197 326 PANTHER F2G19.2 1 326 - -
Lal21g0197 326 MobiDBLite consensus disorder prediction 1 21 - -
Lal21g0197 326 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 326 IPR017066 -
Lal21g0197 326 Pfam Zinc finger, C3HC4 type (RING finger) 278 316 - -
Lal21g0197 326 Coils Coil 175 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0197 Lal-Chr21 1306916 1309722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0197 280 316 Miscellaneous Gene Families AT2G21380 45.946 5.60e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0197 K19042 - gmx:100811918 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0197 21 1306916 1309722 Lal21g0197 21 1306916 1309722 ECH