Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0890 ATGCTTTCATTCACATGGAAGATTACTTTGCAATTTAGTCCTAGGAAATGCAGTCGTGTTGCGGATGCATTAGTTAAGAATGGATTGAGAACTACTACAACTTCTGACATGGTTCCTCAACACATGAGGGCCCCCTGGACAACCATGGCTCTCCCTCAGCACAATCTCCAACAACACTACCAAACCCGACCACTACAACCACAATCGAAATCATTCAGAGCTTTACAAACAGTCGATGGTCAGATGTCGCAGCCGGTTGCCTTCTATAATCCAGCTGATTTGCAAGAGCAGACCCAGCATCCTCCGTATGTTCCTCCTTTTCACGTTGTCGGGTTTGCGCCCGGTCCATTTCCTCCTGCTGACGGTAGTGATGGTGGAGCTGATTTGCAATGGAATTACGGGTTAGAAGCCGAGAGGAAAAGACTAAAAGAACAGGATTTTCTGGAGAACAATTCTCAGATATCTTCCATAGATTTCCTCCAAACTCGATCGGTCTCCACCGGATTGGGTTTGTCACTTGACAATACCCGCATGGCTTCCACCGGGGACTCGGCTTTACTATCACTCATTGGCGATGATATTGAACGTGAATTACAGCAGCAGGACGCGGAAATACAAAAATATCTCAGAGTGCAGGGTGAACGATTGCGGCAAACAATTATGGAGAAGGTTCAAGCAACTCAACTTCAGAGCATGTCAATCGTTGAAGACAAAGTCCTACAGAAACTCAACGAGAAAGAAGCAGAGGTTGAAAGCATCAATAAGAGGAACATGGAGCTTGAAGAGCGAATGGAGCAGTTGACTGTCGAAGCAAGTGCTTGGCAACAACGTGCCAGATACAATGAGAACATGATTGCTGCTCTCAAGTACAATCTTCAGCAAGTATATGCTCAAGGCAGAGATAGCAAAGAAGGATATGGCGACAGCGAGGTAGACGATACTGCTTCATGCTGCAATGGCGGTTTCATTGATTTTCACTTGCTCTCCAAGGACAGCAGTGATATGAAAGAGATTATGACTTGTAAGGTATGCAGAGTCAATGAAGTTAGCATGCTTTTATTACCCTGTAAACACCTCTGCCTTTGTAAAGATTGTGAAAGCAAGCTTAGTTTCTGCCCCTTATGTCAGTCCTCAAAATTTATTGGCATGGAGGTCTATATGTAA 1164 0.4476 MLSFTWKITLQFSPRKCSRVADALVKNGLRTTTTSDMVPQHMRAPWTTMALPQHNLQQHYQTRPLQPQSKSFRALQTVDGQMSQPVAFYNPADLQEQTQHPPYVPPFHVVGFAPGPFPPADGSDGGADLQWNYGLEAERKRLKEQDFLENNSQISSIDFLQTRSVSTGLGLSLDNTRMASTGDSALLSLIGDDIERELQQQDAEIQKYLRVQGERLRQTIMEKVQATQLQSMSIVEDKVLQKLNEKEAEVESINKRNMELEERMEQLTVEASAWQQRARYNENMIAALKYNLQQVYAQGRDSKEGYGDSEVDDTASCCNGGFIDFHLLSKDSSDMKEIMTCKVCRVNEVSMLLLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVYM 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0890 387 PIRSF SBP1_RNase_bind 62 387 IPR017066 -
Lele26g0890 387 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 139 385 IPR017066 -
Lele26g0890 387 Pfam Zinc finger, C3HC4 type (RING finger) 339 377 - -
Lele26g0890 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 327 387 IPR013083 -
Lele26g0890 387 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 324 387 - -
Lele26g0890 387 ProSiteProfiles Zinc finger RING-type profile. 341 376 IPR001841 -
Lele26g0890 387 Coils Coil 236 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0890 Lele-ChrLele26 5700281 5705426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0890 341 377 Miscellaneous Gene Families AT2G21380 48.649 1.09e-07 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0890 26 5700281 5705426 Lele27g1201 27 19057062 19062071 hybridization
Lele26g0890 26 5700281 5705426 Lele28g0871 28 5610854 5619583 hybridization