Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1625 ATGGCTCTCCCTCAGCACCGCTTCCAACAACACTACCAACCCCAGCCACAACAACCACAAACGAAACCATTCAGAAATTTACAAACAGTGGATGGTCAGATGTCGCATCCGGTGGTTGCTTTCTATAACCCAGCTGATTTACAAGATCAGACCCAGCATCCTCCGTATGTTCCTCCGTTTCATGTTGTTGGGTTTGCGCCCGGTCCGTTTCCTCCTGCTGACGGTAGTGATGGTGGAGCTGATTTACAATGCAATTACAGCTTAGAACCCGAGAGGAAAAGGCTAAAAGAACAGGATTTTCTGGAGAACAATTCTCAGATATCTTCAATAGATTTCCTGCAAACTCGATCAGTCTCTACTGGATTGGGTTTGTCACTTGACAATACCCGTATGGCGTCCACCGGAGACTCAGCTTTATTATCAATCATTGGCGACGATATTGAACGTGAGTTACTGCAGCAGGATGCAGAAATACAAAGGTATCTTAGAATAAAGGGTGAACATCTGCGACAAGCAATTTTGGAGAAGGTTCAGGCAACGCAACTTCAGAGTATATCAATTGTTGAAGACAAATTCCTACAGAAGCTTCATGAGAAAGAAGCTGAGGTCGAAAGCATTAATAAGAGGAACATGGAACTTGAAGAGCGAATGGAACAGTTGACTGTTGAAGCAGGTGCCTGGCAACAGCGTGCCAGATACAATGAGAACATGATTGCTGCTCTCAAGTATAATCTTCAGCAAGTATATGTTCAAGGCAGAGATAGCAAAGAAGGATGTGGCGACAGTGAGGTAGATGATACAGCTTCATGCTGCAATGGCCGTAACATTGATTTTCACCTGCTATCCAAGGATAACAATGATATGAAAGAGATGATGACTTGTAAGGTATGCAGAGTCAATGAAGTTAGCATGCTTTTAATACCATGTAAGCATCTCTGCCTCTGTAAAGATTGTGAAAGTAAGCTCAGTTTTTGCCCCTTATGTCAATCCTCAAAATTTATCGGCATGGAGGTCTATATGTAA 1023 0.4311 MALPQHRFQQHYQPQPQQPQTKPFRNLQTVDGQMSHPVVAFYNPADLQDQTQHPPYVPPFHVVGFAPGPFPPADGSDGGADLQCNYSLEPERKRLKEQDFLENNSQISSIDFLQTRSVSTGLGLSLDNTRMASTGDSALLSIIGDDIERELLQQDAEIQRYLRIKGEHLRQAILEKVQATQLQSISIVEDKFLQKLHEKEAEVESINKRNMELEERMEQLTVEAGAWQQRARYNENMIAALKYNLQQVYVQGRDSKEGCGDSEVDDTASCCNGRNIDFHLLSKDNNDMKEMMTCKVCRVNEVSMLLIPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVYM 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1625 340 ProSiteProfiles Zinc finger RING-type profile. 294 329 IPR001841 -
Dere05g1625 340 CDD mRING-HC-C3HC5_CGRF1-like 293 328 - -
Dere05g1625 340 PIRSF SBP1_RNase_bind 4 340 IPR017066 -
Dere05g1625 340 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 91 338 IPR017066 -
Dere05g1625 340 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 275 340 - -
Dere05g1625 340 Pfam Zinc finger, C3HC4 type (RING finger) 292 330 - -
Dere05g1625 340 Coils Coil 189 230 - -
Dere05g1625 340 MobiDBLite consensus disorder prediction 1 23 - -
Dere05g1625 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 340 IPR013083 -
Dere05g1625 340 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1625 Dere-ChrDere05 25952940 25955958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1625 282 330 Miscellaneous Gene Families AT4G39050 40.816 3.93e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1625 05 25952940 25955958 Dere05g1625 05 25952940 25955958 ECH