Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1511 ATGGCTCTTCCCGGGCACCACTACCAACCCCAACAACCACAGTCGCAATCCAAATCTTTCAGAGTTGATTTTGACGCTCAAATGTCGCAGCCCCTTTCCTATTTGCACCGTTCTCCCTTTCATGTCGTTGGACTTGCCCCCCCTGACGATTTGCAATGGAATTTGGGTTCGGAGCACGACAGAAAAAGATTCAAAGAACAAGAGAACAATTCTCAATTATCTTGCGTTGATATCATGCAACCTCGATCAGTCTCTACGGGCTTGGGTTTATCACTCGACAACACTCGCTTCGCTTCCACCGGAGACTCCGCATTTTTATCGCTCATCGGCGATGACATCAATTGCCAGTTGCTGCGTCACGACGCAGAGATAGATACATTCCTCAGACTCCAGAGTGAACGATTGCGAGAAACGGTTTTAGAGAATGTTCAGGCGACACAGCTTAGGAGCATTTCTGTCATTGAAGACAAAGTCCTTCAAAAACTTCACGAGAGAGAAGCGGAGGTAGAAAGCATCAATAGGAGGAATATAGAACTTGAAGAAAGGATGGAGCAGTTGACTGTTGAAGCAGATGTGTGGCAGCAAAGAGCCACATACAATGAGAATATGATTGCTGCTCTGAAGTTTAACCTTCAGCAAGTGCATGTCCAGAGCAGGGACAGTAAAGAAGGATGTGGTGACAGTGAGGTAGATGATGCCGTTTCTTGCTTCGATGGCTGTTCCATTGATTTCCATCCGCTCTCTGGAGAGAAATGCAATGAGAAGGAGATCATGACGTGTAAGGCCTGCAGAGTCAATGTGGTGAGCATGCTTTTATTACCATGTAAGCATCTCTGCCTCTGTAAAGATTGTGAAAGTAAGCTTAGTTTTTGTCCTCTTTGTCAATCCTCCAAATTTATTGGCATGGAGGTCTATATGTAA 921 0.4539 MALPGHHYQPQQPQSQSKSFRVDFDAQMSQPLSYLHRSPFHVVGLAPPDDLQWNLGSEHDRKRFKEQENNSQLSCVDIMQPRSVSTGLGLSLDNTRFASTGDSAFLSLIGDDINCQLLRHDAEIDTFLRLQSERLRETVLENVQATQLRSISVIEDKVLQKLHEREAEVESINRRNIELEERMEQLTVEADVWQQRATYNENMIAALKFNLQQVHVQSRDSKEGCGDSEVDDAVSCFDGCSIDFHPLSGEKCNEKEIMTCKACRVNVVSMLLLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVYM* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1511 306 Coils Coil 162 196 - -
Apr5g1511 306 Pfam Zinc finger, C3HC4 type (RING finger) 258 296 - -
Apr5g1511 306 MobiDBLite consensus disorder prediction 1 20 - -
Apr5g1511 306 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 306 IPR017066 -
Apr5g1511 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 306 IPR013083 -
Apr5g1511 306 ProSiteProfiles Zinc finger RING-type profile. 260 295 IPR001841 -
Apr5g1511 306 PANTHER F2G19.2 1 306 - -
Apr5g1511 306 PIRSF SBP1_RNase_bind 3 306 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1511 Apr-Chr5 19061916 19064321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1511 260 296 Miscellaneous Gene Families AT2G21380 45.946 2.13e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1511 K19042 - gmx:100783373 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1511 5 19061916 19064321 Apr5g1511 5 19061916 19064321 ECH