Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02208 ATGGCTTTCCCTCAGGACCAGTTCCAACGGCACTACCAAACCCAACAACAACAGCCACAAATTAAATCTTTCAGAAATTTAGGAGCAACAGATGGTCAAATGTCTCAGCAGGTGGCCTTTTACAACCCCACTGATTTACAAGATCAGGCACAACATCCACCTTACATTCCTCCATTTCATGTTGTTGGGTTTGCTCCGGGTCCTGTCCCTCCTGCTGATGGTAGTGATGGTGGAGTTGATTTGCACTGGAATTATGGTTTGGAACCAGAGAGGAAGAGACTTAAAGAACAGGATTTTTTGGAAAACAATTCTCAGATATCTTCAGTAGATTTCCTGCAACCCCGATCAGTGTCCACTGGATTGGGCTTGTCACTTGATAATACTCGCCTGAATTCCACTGGAGACTCGGCTTTGTGGTCACTCATCGGTGATGACATTGATCGCGAGTTACAGCAGCAGGATCTAGAGATAGATAGATTTCTCAAAGTGCAGGGTGAACGATTGCGACAAACAATTTTAGAGAAGGTTCAGGCAACACAGCTTCAGAGTGTTTCAATCATTGAAGACAGAGTCCTTCAGAAACTTCGTGAGAAAGAAGCCGAGGTAGAAAGCATCAATAAGAGGAACATGGAACTTGAAGACCGAATGGAGCAGCTAACTGTAGAAGCCGGTGCATGGCAACAACGAGCCAGATACAATGAAAATATGATTGCTGCTCTCAAGTTTAACCTTCAGCAAGCATATGTCCAAAGCCGGGATAGTAAAGAAGGTTGTGGCGACAGTGAGGTAGATGATACAGCTTCTTGCTGCAATGGCCGTACCCTTGATTTTCATCTTCTTTCCAAGGAGAATACTGATGTGAAAGAGATGATGACATGTAAGGCTTGCAGGGTCAATGAAGTGACCATGGTTTTATTACCTTGTAAGCATCTTTGCCTCTGTAAAGATTGTGAAAGTAAGCTTAGTTTTTGCCCTCTATGTCAATCCTCTAAATTTATTGGCATGGAGGTCTACATGTGA 1020 0.4363 MAFPQDQFQRHYQTQQQQPQIKSFRNLGATDGQMSQQVAFYNPTDLQDQAQHPPYIPPFHVVGFAPGPVPPADGSDGGVDLHWNYGLEPERKRLKEQDFLENNSQISSVDFLQPRSVSTGLGLSLDNTRLNSTGDSALWSLIGDDIDRELQQQDLEIDRFLKVQGERLRQTILEKVQATQLQSVSIIEDRVLQKLREKEAEVESINKRNMELEDRMEQLTVEAGAWQQRARYNENMIAALKFNLQQAYVQSRDSKEGCGDSEVDDTASCCNGRTLDFHLLSKENTDVKEMMTCKACRVNEVTMVLLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVYM* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02208 339 Coils Coil 188 229 - -
Rops9g02208 339 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 274 339 - -
Rops9g02208 339 FunFam Baculoviral IAP repeat containing 7 302 336 - -
Rops9g02208 339 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 91 337 IPR017066 -
Rops9g02208 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 339 IPR013083 -
Rops9g02208 339 Pfam Zinc finger, C3HC4 type (RING finger) 291 329 - -
Rops9g02208 339 CDD mRING-HC-C3HC5_CGRF1-like 292 327 - -
Rops9g02208 339 PIRSF SBP1_RNase_bind 9 339 IPR017066 -
Rops9g02208 339 ProSiteProfiles Zinc finger RING-type profile. 293 328 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02208 Rops-Chr9 40459507 40462420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02208 281 329 Miscellaneous Gene Families AT4G39050 40.816 3.42e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02208 K19042 - gmx:100811918 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02208 9 40459507 40462420 Rops9g02208 9 40459507 40462420 ECH