Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1201 ATGACATCCAAGGGCCACGGTAGAATGCAAAATACACTCAAGGACCTGAAATTTTTTGAAAATACAACATTCATTCTTAACTTCTTTCCCTTTGGTTCTGGGCCTATTGGATCAGACTCTTCTGGCGGTGTTCTCTCAAATTTGGGCTTCAGATTTTCCGTGACAAGCATGGCTCTCTCCCAGCACCATCTCCAACAACACTACCAAACCCAACCACTACAACCAAAATCGAAATCATTCAGGCAAATACTGGCTTTACAAACAGTAGATGGTCAGATGTCGCAGCCGGTTGCCTTCTATAATCCAGCTGATTTGCAAGATCAGACGCAGCATCATCCTTATGTTCCTCCTTTTCATGTTGTCGGGTTTGCGCCCGGTCCATTTCCTCCTGGCGACGGTAGGGATGGTGGAGCTGATTTGCAATGGAATTTCGGGTTAGAACCCGAGAGGAAAAGACTAAAAGAACAAGATTTTCTGGAGAACAATTCTCAGATATCTTCCATAGATTTCCTCCAAACTCGATCGGTCTCAACTGGATTGGGCTTGTCACTTGACAATACCCGCGGTGCTTCCTCCGGAGACTCGGCTTTATTATCACTCATTGGTGATGACATTGAACGTGAATTACAGCAGCAGGACGCAGAAATAGAAAAATATCTCAGAATGCAGGGTGAACGATTGCGGCAAACAATTATGGAGAAGGTTCAAGATACTCAACTTCAAAGCATGTCAATTGTTGAAGACAAAGTCCTACAGAAACTTAACGAGAAAGAAGCAGAGGTTGAAAGCATCAATAAAAGGAACATGGAACTTGAAGAGCAAATGGAGCAGTTGACTGTCGAAGCAAGTGCTTGGCAACAACGTGCCAGATACAATGAGAACATGATTGCCGCTCTCAAGTACAATCTTCAGCAGGTATATGCTCAAGGTAGAGAAAGCAAAGAAGGATGTGGCGACAGCGAGGTAGATGATACTGGTTCATGCTGCAATGGCCGTTCCATTGATTTTCACCTGCTCTCCACGGACAACAATGATATGAAAGAGATGATGACTTGTAAGGTATGCAGAGTCAATGAAGCTAGCATGCTTTTATTACCCTGTAAACACCTCTGCCTTTGTAAAGATTGTGAAAGTAAGCTTAGTTTCTGCCCCTTGTGTCAATCCTCAAAATTTATTGGCATGGAGGAAATCAAAGTTGTGTTGAGGTGA 1209 0.4351 MTSKGHGRMQNTLKDLKFFENTTFILNFFPFGSGPIGSDSSGGVLSNLGFRFSVTSMALSQHHLQQHYQTQPLQPKSKSFRQILALQTVDGQMSQPVAFYNPADLQDQTQHHPYVPPFHVVGFAPGPFPPGDGRDGGADLQWNFGLEPERKRLKEQDFLENNSQISSIDFLQTRSVSTGLGLSLDNTRGASSGDSALLSLIGDDIERELQQQDAEIEKYLRMQGERLRQTIMEKVQDTQLQSMSIVEDKVLQKLNEKEAEVESINKRNMELEEQMEQLTVEASAWQQRARYNENMIAALKYNLQQVYAQGRESKEGCGDSEVDDTGSCCNGRSIDFHLLSTDNNDMKEMMTCKVCRVNEASMLLLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEEIKVVLR 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1201 402 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 334 397 - -
Lele27g1201 402 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 150 395 IPR017066 -
Lele27g1201 402 Coils Coil 247 288 - -
Lele27g1201 402 Pfam Zinc finger, C3HC4 type (RING finger) 350 388 - -
Lele27g1201 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 392 IPR013083 -
Lele27g1201 402 ProSiteProfiles Zinc finger RING-type profile. 352 387 IPR001841 -
Lele27g1201 402 Coils Coil 202 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1201 Lele-ChrLele27 19057062 19062071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1201 352 388 Miscellaneous Gene Families AT4G39050 48.649 9.14e-08 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0878 25 5611360 5619919 Lele27g1201 27 19057062 19062071 hybridization
Lele26g0890 26 5700281 5705426 Lele27g1201 27 19057062 19062071 hybridization