Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi17g0673 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0674 . . . . . . Aed10g1083 Aed6g1606 . . . . . . . . . . . Apr9g2974 . . Bach5g00445 . . . Bva06g01178 Bva05g00518 . Car05g00722 Cca03g00623 Cca11g01990 . . . . . . . . . Gma04g01599 Gma05g00230 . . . . . . . . . . . . . . . . . Lapu3g00994 . . . . . . . . . . . . Lja4g2107 . Mal2g4307 . . . . . . . Mtr3g0862 . . Phco8g01384 . . . . . Pste6g02631 . . . . . Pumo4g01254 . Pvu3g1932 . Rops2g03848 . Seca4g03300 . Spst3g04734 . Ssu1g2068 Ssu6g1227 . . . Tpr3g4437 . . . Tsu03g01679 Vian1g00808 . Vifa2g00579 . Vimu7g00833 . Viun3g04620 . . . . Vra7g1921
Vvi17g0675 . . . . . . . . . . . . . . . . . . Apr1g0956 . . . . . . . . . . . . . . . . . . . . . Gma06g01784 . Gma05g00229 Gma17g00718 Gso6g1674 . Gso6g1674 Gso6g1674 . . . . . . . . . . . . . . . . . . . . . . . . Lja1g5557 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto12g0935 . . . . . . . . . . . . . . . . . .
Vvi17g0676 . . . . . . . . . . . Ahy20g2616 . Aip10g03055 . . . Amo20g3394 . . . . . . . . . . . . . . . . . Dod02g2435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0677 . . . . . . . . . . . . . . . . . . . Apr9g2973 . . . . . . Bva06g01176 Bva05g00519 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja4g2105 . . . . . . . . . . . . . . . . Psa4g1142 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0678 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal19g1459 . . . . . Lan1g1051 . . . . . . . . . . . . . . . . . . . . Mal2g5072 . Mepo5g02837 . Mesa9g00703 . . . Mtr3g0588 . . . Phco7g02323 . . . . . Pste2g00507 . . Pte3g00409 . . . . Pvu9g2002 . . . . . . . . . . . Tpr3g4452 . Trre5g01748 . Tsu03g01708 . . . . . Vimu10g00957 . . . . . .
Vvi17g0679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car07g00905 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0680 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00728 . . . . . . . . . . . . . . . . . . . . . . . Lal21g0706 . . . . . . . . . . . . . . . . . . . . . Mal2g5075 . . . . . . . Mtr3g0585 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr3g4450 . . . Tsu03g01706 . . . . . . . . . . . .
Vvi17g0681 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0682 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2413 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi17g0673 Chr17 7343336 7345183 +
Vvi Vvi17g0674 Chr17 7387424 7411694 -
Aed Aed10g1083 Chr10 9864180 9867224 -
Aed Aed6g1606 Chr6 20025730 20028301 -
Apr Apr9g2974 Chr9 36616351 36626675 +
Bach Bach5g00445 Chr5 3017659 3020047 -
Bva Bva06g01178 Chr06 9259106 9262622 +
Bva Bva05g00518 Chr05 2545620 2548180 -
Car Car05g00722 Chr05 40614314 40620200 -
Cca Cca03g00623 Chr03 10948915 10952569 -
Cca Cca11g01990 Chr11 45337983 45341165 -
Gma Gma04g01599 Chr04 43474950 43478817 +
Gma Gma05g00230 Chr05 2098310 2101077 +
Lapu Lapu3g00994 Chr3 10681454 10684102 +
Lja Lja4g2107 Chr4 22623395 22626191 +
Mal Mal2g4307 Chr2 82000228 82005519 -
Mtr Mtr3g0862 Chr3 12724521 12732097 +
Phco Phco8g01384 Chr8 14374230 14376428 -
Pste Pste6g02631 Chr6 13738650 13749485 -
Pumo Pumo4g01254 Chr4 16020976 16023635 +
Pvu Pvu3g1932 Chr3 39889823 39892266 +
Rops Rops2g03848 Chr2 70767556 70770432 -
Seca Seca4g03300 Chr4 56836035 56839040 -
Spst Spst3g04734 Chr3 99109714 99111950 -
Ssu Ssu1g2068 Chr1 58922699 58926144 +
Ssu Ssu6g1227 Chr6 20036950 20038592 +
Tpr Tpr3g4437 Chr3 49425631 49430367 -
Tsu Tsu03g01679 Chr03 16992829 16998581 -
Vian Vian1g00808 Chr1 8466015 8468167 -
Vifa Vifa2g00579 Chr2 121762066 121765069 +
Vimu Vimu7g00833 Chr7 8235904 8239717 -
Viun Viun3g04620 Chr3 53761862 53764638 -
Vra Vra7g1921 Chr7 38734671 38736847 -
Vvi Vvi17g0675 Chr17 7414904 7417040 -
Apr Apr1g0956 Chr1 14050796 14053782 -
Gma Gma06g01784 Chr06 18468297 18472231 -
Gma Gma05g00229 Chr05 2091669 2093801 +
Gma Gma17g00718 Chr17 6093892 6094546 -
Gso Gso6g1674 Chr6 18034734 18038657 -
Gso Gso6g1674 Chr6 18034734 18038657 -
Gso Gso6g1674 Chr6 18034734 18038657 -
Lja Lja1g5557 Chr1 96577353 96580704 -
Sto Sto12g0935 Chr12 5798265 5799122 -
Vvi Vvi17g0676 Chr17 7428214 7429020 +
Ahy Ahy20g2616 Chr20 135383708 135387232 +
Aip Aip10g03055 Chr10 127552655 127556156 +
Amo Amo20g3394 Chr20 143137361 143140954 +
Dod Dod02g2435 Chr02 53631354 53632145 -
Vvi Vvi17g0677 Chr17 7433358 7435223 +
Apr Apr9g2973 Chr9 36606956 36610412 -
Bva Bva06g01176 Chr06 9251490 9254779 -
Bva Bva05g00519 Chr05 2554185 2557565 +
Lja Lja4g2105 Chr4 22608518 22611936 -
Psa Psa4g1142 Chr4 82245937 82249018 -
Vvi Vvi17g0678 Chr17 7465853 7468281 +
Lal Lal19g1459 Chr19 17154463 17164072 +
Lan Lan1g1051 Chr1 20740538 20743990 -
Mal Mal2g5072 Chr2 118819016 118820755 +
Mepo Mepo5g02837 Chr5 34377032 34380202 -
Mesa Mesa9g00703 Chr9 14278740 14280397 -
Mtr Mtr3g0588 Chr3 7760456 7763781 -
Phco Phco7g02323 Chr7 40829709 40833384 +
Pste Pste2g00507 Chr2 4666498 4669479 +
Pte Pte3g00409 Chr3 3372073 3374989 -
Pvu Pvu9g2002 Chr9 28729177 28732975 +
Tpr Tpr3g4452 Chr3 49557640 49561286 -
Trre Trre5g01748 Chr5 12818642 12820300 -
Tsu Tsu03g01708 Chr03 17450967 17454639 -
Vimu Vimu10g00957 Chr10 8581955 8585380 -
Vvi Vvi17g0679 Chr17 7475229 7477459 +
Car Car07g00905 Chr07 8044091 8046340 +
Vvi Vvi17g0680 Chr17 7501924 7507422 +
Car Car05g00728 Chr05 41357099 41362620 +
Lal Lal21g0706 Chr21 5668056 5672059 -
Mal Mal2g5075 Chr2 118855065 118859264 +
Mtr Mtr3g0585 Chr3 7743754 7749425 -
Tpr Tpr3g4450 Chr3 49536835 49542800 -
Tsu Tsu03g01706 Chr03 17414335 17419121 -
Vvi Vvi17g0681 Chr17 7508750 7514311 +
Vvi Vvi17g0682 Chr17 7517397 7520816 +