Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3394 ATGTGGAACTTTGCTTCAAACTGTATTGCTGGAAGTGTGCGGCAGAAAAATGATTCCACAAAGCCAACTCATTCTGCATCGGAATGTTCTGATGATGAGAATTCGGTTGTTGGGAGAGAAGAAGGGCTGGAATGCCCAATATGCTGGGAATCTTTCAACATTGTTGAAAATGTGCCCTATGTATTGTGGTGTGGCCACACCCTTTGTAAAAATTGTATCCTGGGACTGCAATGGGCCGTTGTGAAGTTCCCAACGCTGCCAATTCAACTTCCTCTCTTTATCTCCTGCCCGTGGTGCAACCTTCTATCTTTCCGTCTGGTTTATCAAGGGAATATTAAATTCCCTCGCAAGAACTACTTTCTTCTTTGGATGGTTGAGAGCATGAATGGTGATAGAGGGAAATCACACTCAAATTGTGGTGGTGATAATCAACAACATTGGCCAATTAAAGACAATTTAACCATGGGAAGCTATGTAAGCCATGGAAATGCCCGGAGGAGCCAAGTTCACCACCCAGAGACATCTGGTTCTGGCCCTTATCATGGCAATACCGGCGATTATCTCAGGATGGAAAGGCTGCATGCTTCTCTTCGGAAGTCGCTGGTTTTTGTTGTCCAATTGACAGCTAAGTTCCCATTGGTCATTATATTTCTTTTGATCATCTTATATGCGATACCAGCTAGTGCTGCCATCTTGGCTCTGTATATACTTGTTACGATTCTCTTTGCTCTCCCGTCATTTCTCATCTTATACTTCTCATATCCTAGTTTGGATTGGCTTATCAGAGAAATTGTCACTTGA 801 0.432 MWNFASNCIAGSVRQKNDSTKPTHSASECSDDENSVVGREEGLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYQGNIKFPRKNYFLLWMVESMNGDRGKSHSNCGGDNQQHWPIKDNLTMGSYVSHGNARRSQVHHPETSGSGPYHGNTGDYLRMERLHASLRKSLVFVVQLTAKFPLVIIFLLIILYAIPASAAILALYILVTILFALPSFLILYFSYPSLDWLIREIVT* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3394 266 PANTHER OS03G0211100 PROTEIN 1 266 - -
Amo20g3394 266 ProSiteProfiles Zinc finger RING-type profile. 45 100 IPR001841 -
Amo20g3394 266 SUPERFAMILY RING/U-box 40 103 - -
Amo20g3394 266 PANTHER UBIQUITIN-PROTEIN LIGASE 1 266 - -
Amo20g3394 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 137 IPR013083 -
Amo20g3394 266 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Amo20g3394 266 Pfam RING-type zinc-finger 45 78 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3394 Amo-Chr20 143137361 143140954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3394 1 266 Miscellaneous Gene Families AT3G29270 63.838 6.45e-118 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3394 - - gmx:100809368 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3394 20 143137361 143140954 Amo20g3394 20 143137361 143140954 ECH
Amo20g3394 20 143137361 143140954 Amo10g2737 10 92026048 92029116 hybridization
Amo20g3394 20 143137361 143140954 Amo14g3749 14 142651494 142654257 PCT
Amo14g3749 14 142651494 142654257 Amo20g3394 20 143137361 143140954 PCT