Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2616 ATGTGGAACTTTGCTTCAAACTGTATTGCTGGAAGTGTGCGGCAGAAAAATGATTCCACAAAGCCAACTCATTCTGCATCGGAATGTTCTGATGATGAGAATTCGGTTGTTGGGAGAGAAGAAGGGCTGGAATGCCCAATATGCTGGGAATCTTTCAACATTGTTGAAAATGTGCCCTATGTATTGTGGTGTGGCCACACCCTTTGTAAAAATTGTATCCTGGGACTGCAATGGGCCGTTGTGAAGTTCCCAACGCTGCCAATTCAACTTCCTCTCTTTATCTCCTGCCCGTGGTGCAACCTTCTATCTTTCCGTCTGGTTTATCAAGGGAATATTAAATTCCCTCGCAAGAACTACTTTCTTCTTTGGATGGTTGAGAGCATGAATGGTGATAGAGGGAAATCACACTCAAATTGTGGTGGTGATAATCAACAACATTGGCCAATTAAAGACAATTTAACCATGGGAAGCTATGTAAGCCATGGAAATGCCCGGAGGAGCCAAGTTCACCACCCAGAGACATCTGGTTCTGGCCCTTATCATGGCAATACCGGCGATTATCTCAGGATGGAAAGGCTGCATGCTTCTCTTCGGAAGTCGCTGGTTTTTGTTGTCCAATTGACAGCTAAGTTCCCATTGGTCATTATATTTCTTTTGATCATCTTATATGCGATACCAGCTAGTGCTGCCATCTTGGCTCTGTATATACTTGTTACGATTCTCTTTGCTCTCCCGTCATTTCTCATCTTATACTTCTCATATCCTAGTTTGGATTGGCTTATCAGAGAAATTGTCACTTGA 801 0.432 MWNFASNCIAGSVRQKNDSTKPTHSASECSDDENSVVGREEGLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYQGNIKFPRKNYFLLWMVESMNGDRGKSHSNCGGDNQQHWPIKDNLTMGSYVSHGNARRSQVHHPETSGSGPYHGNTGDYLRMERLHASLRKSLVFVVQLTAKFPLVIIFLLIILYAIPASAAILALYILVTILFALPSFLILYFSYPSLDWLIREIVT* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2616 266 PANTHER UBIQUITIN-PROTEIN LIGASE 1 266 - -
Ahy20g2616 266 ProSiteProfiles Zinc finger RING-type profile. 45 100 IPR001841 -
Ahy20g2616 266 SUPERFAMILY RING/U-box 40 103 - -
Ahy20g2616 266 PANTHER OS03G0211100 PROTEIN 1 266 - -
Ahy20g2616 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 137 IPR013083 -
Ahy20g2616 266 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Ahy20g2616 266 Pfam RING-type zinc-finger 45 78 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2616 Ahy-Chr20 135383708 135387232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2616 1 266 Miscellaneous Gene Families AT3G29270 63.838 6.45e-118 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2616 - - gmx:100809368 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2616 20 135383708 135387232 Ahy20g2616 20 135383708 135387232 ECH
Ahy20g2616 20 135383708 135387232 Ahy10g2125 10 109514930 109518392 hybridization
Ahy20g2616 20 135383708 135387232 Ahy14g2933 14 138092469 138094954 PCT
Ahy20g2616 20 135383708 135387232 Ahy4g2591 4 123857276 123859766 PCT
Ahy14g2933 14 138092469 138094954 Ahy20g2616 20 135383708 135387232 PCT
Ahy4g2591 4 123857276 123859766 Ahy20g2616 20 135383708 135387232 PCT