Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0678 ATGGTACAGAAGCGTTCATTTGATGATGAGGAGTTATACGAGATTTCTTCTAAGCACCCCAGACAATTAGAACATAATCATCATCTAATTTCATTTTTGGAATTTGTTCCTTTTGATGATCCTCTTCAGAAGCCTCGTGTTCAAGGTGAGGGAGAATTATTAAAATGTAAAACTGAAGGTGATGAGAAGCTTCTCAGTGGCTTCTGTACTGATTTTCCAATAAGTGCTAAAGACACTGAAACCTTTATGCGTGGCTGCATTTCCACCTCATCATGGGCCACCAGCAGTACTAGTGAAGATGATGCCAGGTCAGAGGCACCAATTGATGTATCACTGTTTCCAGAATATTTTAGTTCTGACAGTCCAGTGAGGGCATCCAACGACTCTGATGACTACTATTTATCTCTTTTGGATTATCCTCCCCGAAAATCTGTCCCCATTGGATCAGATCATCAAGTTGATGTTCCAGCATGGAGCCAGGGTATCATGGATTCATTAGATTACTTAGAAACATCTGAACAAGTAATTTTCTCTCCACAAGCTTCAGGCTTGGAACTCAGTGTTGGTAACATTGATGAGAAAAGGCTGATTGGGACATGTGTAATGCCAATGCCCAAGTCAGAACCATTTTGCAACGATGCTGTAGTCGGAAATGGTAGAACTGATTGTAGCTGTCATGATAGGGGTTCTTACAGATGTGTAAGACAACATATTGCGGAAGCAAGAGAGAAACTTAGAGGAACCCTTGGAGAGGAGAGGTTTGTAAAGCTGGGTTTCCATGACATGGGAGAGGAAGTTGCAGAGAAATGGAATGAAGAGGAAGAACAATTATTTCACGAGGTTGTCTTCTCTAATCCAGTGTCATTGGGTAAGAATTTTTGGGACAATCTTTCCTTAGTCTTCCCTTCCCGAACTACAAGGGAAATAGTCAGCTATTATTTTAACGTGTTCATGCTTCGAAAACGGGCAGAACAGAACAGATATGACCCAGAGAACATTGACAGTGATAATGATGAGTGGCCGGAGACTGATGATTATTGCAATGATGAACATGAAATGACAGAGGAAGATGAGGATTCTGTTGTTGAATCCCCGATATATCAAGAGGATCCTAGTTATAATCCATGTCATGCAGATGATAAACGAAAATATGAGGATATTGGGGATGGAACTCATGGTGATAACGAGAATGTAAATTATGGTAGTGGGATGGACATCCTTGATATTTCAGAATCATGCACTGACAAGTTACTAAACAATTCTGGTTCTGATTCCATTTGTCAGCTTTCAGATGTTCCCTGGGATGGAAAGGGAGACCATGGCATCAAAGATGGCTCATGCACATCCTCCAATACAGGGGCTGACTCACAAAGGACCCAAGCGAAGGCTGGCAATGGTGACCACTGGTATGCTTTGGAGCCCTGTGATGCTAAAGTATGGGATGCTGGGTATGTGACTTGCTCCAAAACTAAAGTTGATTTGTTATCAACTTGCAGTATGATTGAAGAGGTTTTTGGAGCTGGTACTGGGACGTACAAGGGAGCAGATGGTCAGGGCTTGATTTAG 1566 0.4195 MVQKRSFDDEELYEISSKHPRQLEHNHHLISFLEFVPFDDPLQKPRVQGEGELLKCKTEGDEKLLSGFCTDFPISAKDTETFMRGCISTSSWATSSTSEDDARSEAPIDVSLFPEYFSSDSPVRASNDSDDYYLSLLDYPPRKSVPIGSDHQVDVPAWSQGIMDSLDYLETSEQVIFSPQASGLELSVGNIDEKRLIGTCVMPMPKSEPFCNDAVVGNGRTDCSCHDRGSYRCVRQHIAEAREKLRGTLGEERFVKLGFHDMGEEVAEKWNEEEEQLFHEVVFSNPVSLGKNFWDNLSLVFPSRTTREIVSYYFNVFMLRKRAEQNRYDPENIDSDNDEWPETDDYCNDEHEMTEEDEDSVVESPIYQEDPSYNPCHADDKRKYEDIGDGTHGDNENVNYGSGMDILDISESCTDKLLNNSGSDSICQLSDVPWDGKGDHGIKDGSCTSSNTGADSQRTQAKAGNGDHWYALEPCDAKVWDAGYVTCSKTKVDLLSTCSMIEEVFGAGTGTYKGADGQGLI* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0678 521 CDD SANT 269 317 IPR001005 -
Vvi17g0678 521 MobiDBLite consensus disorder prediction 444 461 - -
Vvi17g0678 521 MobiDBLite consensus disorder prediction 440 461 - -
Vvi17g0678 521 PANTHER DNA BINDING PROTEIN 1 511 - -
Vvi17g0678 521 Gene3D - 270 335 - -
Vvi17g0678 521 Pfam Myb-like DNA-binding domain 268 316 IPR001005 -
Vvi17g0678 521 SMART sant 266 319 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0678 Vvi-Chr17 7465853 7468281 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0678 - - vvi:100263964 1065.45