Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03055 ATGTGGAACTTTGCTTCAAACTGTATTGCTGGAAGTGTGCGGCAGAAAAATGATTCCACAAAGCCAACTCATTCTGCATCGGAATGTTCTGATGATGAGAATTCGGTTGTTGGGAGAGAAGAAGGGCTGGAATGCCCAATATGCTGGGAATCTTTCAACATTGTTGAAAATGTGCCCTATGTATTGTGGTGTGGCCACACCCTTTGTAAAAATTGTATCCTGGGACTGCAATGGGCCGTTGTGAAGTTCCCAACGCTGCCAATTCAACTTCCTCTCTTTATCTCCTGCCCGTGGTGCAACCTTCTATCTTTCCGTCTGGTTTATCAAGGGAATATTAAATTCCCTCGCAAGAACTACTTTCTTCTTTGGATGGTTGAGAGCATGAATGGTGATAGAGGGAAATCACACTCAAATTGTGGTGGTGATAATCAACAACATTGGCCAATTAAAGACAATTTAACCATGGGAAGCTATGTAAGCCATGGAAATGCCCGGAGGAGCCAAGTTCACCACCCAGAGACATCTGGTTCTGGCCCTTATCATGGCAATACCGGCGATTATCTCAGGATGGAAAGGCTGCATGCTTCTCTTCGGAAGTCGCTGGTTTTTGTTGTCCAATTGACAGCTAAGTTCCCATTGGTCATTATATTTCTTTTGATCATCTTATATGCGATACCAGCTAGTGCTGCCATCTTGGCTCTGTATATACTTGTTACGATTCTCTTTGCTCTCCCGTCATTTCTCATCTTATACTTCTCATATCCTAGTTTGGATTGGCTTATCAGAGAAATTGTCACTTGA 801 0.432 MWNFASNCIAGSVRQKNDSTKPTHSASECSDDENSVVGREEGLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYQGNIKFPRKNYFLLWMVESMNGDRGKSHSNCGGDNQQHWPIKDNLTMGSYVSHGNARRSQVHHPETSGSGPYHGNTGDYLRMERLHASLRKSLVFVVQLTAKFPLVIIFLLIILYAIPASAAILALYILVTILFALPSFLILYFSYPSLDWLIREIVT 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03055 266 PANTHER OS03G0211100 PROTEIN 1 266 - -
Aip10g03055 266 ProSiteProfiles Zinc finger RING-type profile. 45 100 IPR001841 -
Aip10g03055 266 SUPERFAMILY RING/U-box 40 103 - -
Aip10g03055 266 PANTHER UBIQUITIN-PROTEIN LIGASE 1 266 - -
Aip10g03055 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 137 IPR013083 -
Aip10g03055 266 Pfam RING-type zinc-finger 45 78 IPR027370 -
Aip10g03055 266 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03055 Aip-Chr10 127552655 127556156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03055 1 266 Miscellaneous Gene Families AT3G29270 63.838 6.45e-118 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03055 - - gmx:100809368 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g03055 10 127552655 127556156 Aip10g03055 10 127552655 127556156 ECH
Aip10g03055 10 127552655 127556156 Aip04g03353 04 127901742 127906430 PCT