Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0676 ATGTGGAATTTTGCTTCAAATGCCCTCTCAGGAACCAATGGACTGAAGAATGACCTCTTAAAGCCAAATCAAGCACCTTCAGAGTGCTCAGATGATGAAATTTCCACAAACACAAGCAGAGAAGAAGGATTGGAATGTCCAATTTGTTGGGAATCCTTCAACATTGTTGAGAATGTGCCCTATGTTTTATGGTGTGGCCATACCCTCTGTAAGAATTGTGTCCTAGGGCTCCAATGGGCTGTCGTGAAATTCCCTACACTACCCATCCAGCTTCCTTTCTTCATTTCTTGCCCGTGGTGCAATCTATTATCCTTCAGGCTTGTTTATAAGGGGAATCTCACATTCCCTCGCAAGAATTTTTTCCTCCTGTGGATGGTTGAGAGCATGAATGGTGATAGGGGGAAGTCACATTCTTCCTTTTGTGATCATCAGCCAGGCTGGTCTTCAAACAGAAATCTGATCATAGGAAATCAAGGTAGTCATGTAAACCATAGGCGACCTCCATATAGTCACCTCCCAGAACAGTCTGAGTCGAACCATGATGGAGGCCACCTGATCAATAGGTTCCTCAATATAGAAAGACTCCACTTATCCGTTCGTAAGTCCTTGGTGTTCTTTGTTCACTTGACGGCTAAGTTCCCATTGGTAATCATATTTCTTCTGATTGTTTTGTATGCAATACCCGCCAGTGCAGCCATCTTGGCCCTGTACATTCTGATCACTGTTCTGTTTGCTCTCCCATCTTTTCTAATACTGTACTTTGCTTATCCCAGTTTGGACTGGTTGGTTAGGGAAATCATTACCTGA 807 0.4349 MWNFASNALSGTNGLKNDLLKPNQAPSECSDDEISTNTSREEGLECPICWESFNIVENVPYVLWCGHTLCKNCVLGLQWAVVKFPTLPIQLPFFISCPWCNLLSFRLVYKGNLTFPRKNFFLLWMVESMNGDRGKSHSSFCDHQPGWSSNRNLIIGNQGSHVNHRRPPYSHLPEQSESNHDGGHLINRFLNIERLHLSVRKSLVFFVHLTAKFPLVIIFLLIVLYAIPASAAILALYILITVLFALPSFLILYFAYPSLDWLVREIIT* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0676 268 PANTHER UBIQUITIN-PROTEIN LIGASE 1 268 - -
Vvi17g0676 268 Pfam RING-type zinc-finger 46 84 IPR027370 -
Vvi17g0676 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 138 IPR013083 -
Vvi17g0676 268 ProSiteProfiles Zinc finger RING-type profile. 46 101 IPR001841 -
Vvi17g0676 268 SUPERFAMILY RING/U-box 40 104 - -
Vvi17g0676 268 ProSitePatterns Zinc finger RING-type signature. 65 74 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0676 Vvi-Chr17 7428214 7429020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0676 1 268 Miscellaneous Gene Families AT3G29270 63.060 3.20e-116 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0676 - - vvi:100241642 538.11