Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi17g0673 | ATGAAAAGATCAGTGAAATCATTCCTACAAGCTCGAAGCAACCTCTCCCAGTGGACCCACAACCTAACCATCCGTCCATCTTCAACCTCTGCACTTACGCTCTGTGAAAATCCACCTCAAATAACAGAATCCAAGCATTCCCATTTGACAAAATCAATCTCAAATCATGCCCACATGAACCAAATGCTCAGCCAGATGATCATGAACTACATACCCATCGACCACCTCAATTTGATGAAGCTGATAGACTTTTCCGTGTCCTCGCATGGTTTTGCAGCCTCTGCTCTTCTCTTTACTCAGTTCTATGGATTCATTGATTCTGACCTCTGTAACTCCATGATCAGATGTTATACTGACTCGAACAAGCATTTACATTCAGTTTTTATATACACCCAGATGTGGAAAAATGGTATTTTTCCCGACTCTTCAACTTTTCCCACTGTGCTCAAATCAGTTGCGCAGTTATGCCGCCAAGAACTTGGAAAAGCGATACATTGTTGCATTATTCAAATGGGTTTTGAGTCAAATGTCTACGTAAGCACTGCACTCGTTAATATGTATGGTACTTGTTCATCGGTTAGTGATGCTCGTCAAGTGTTTGATGAAATTCCGGACAGAAATATTGTGTCGTGGAATGCTTTGATCACTGGTTACAACCACAATAGGATGTTCAGGAAAGTGATTGATGTGTTCAGAGAGATGCAGATTGCCGGGGCAAAGCCAGTGGAGGTGACCATGGTGGGGGTTCTATTGGCTTGTGCCCATTTGGGAGCTTTGAACCAGGGAAGGTGGATTGATGATTATATCGACCATAATAGATTGAGATTGAATGTGTTTGTTGGTACTGCTCTTATAGACATGTATGCCAAATGTGGGGTTGTTGATGAGGCAGAAAAGATTTTCAAAGCAATGAGGGTAAAGAACGTCTATACTTGGAATGTGTTGATCTCAGGATATGCCATGAATGGGCGGGGTGAATCTGCTTTGCAGGCTTTTTCTAGGATGATTATGGAGAAGTTTAAGCCTGATGAGGTTACTTTCTTAGGTGTACTGTGTGCTTGTTGTCACCAAGGCCTTGTCAATGAAGGGCGGACATATTTTACAAGCATGAAGGAAGAGTTTGGATTGCGACCAAGGATAGAGCACTATGGGTGCATGGTTGACCTACTTGGTCGAGCTGGATTCCTGGATGAAGCCCAGCAGCTAATACAAGCCATGAGCATGCAACCTGACCCTATAATCTGGAGGGAATTGCTAGGTGCTTGCCGGATTCATGGCAATATCCAATTGGGTGAGTTTGCAATTAAAAAACTTCTCGAGCTTGAGCCAAACAATGGTGAGAATTATGTGTTGCTAGCAAATCTATATGCTCGGGACCAAAGGTGGGATAAGGTTGGAGAAGTAAGAGAAATGATGGATTGTAGAAGAGTCCGGAAGGTCCCAGGTTGCAGTTCTATTGAAATTGATAATGTGGTTTATGAGTTTGTGGTGTCAAATTATATTAAACCAGGATTTGAGGAGGTATATAAGCTGTTGGCTGATATGAACAAGAAATTGAAATTGGCTGGTTATGTTGCAGACACTGGCATGGCTTCCTATGACATTGAGGAAGAAGAGAAGGAACACTCTCTAATGTATCATAGCGAGAAGCTTGCACTGGCATTTGGACTTCTGAAGTCTCCTTCAGGTTTGACCTTAAGGATAGTGAAGAATTTAAGGATCTGTCAGGATTGCCATGGGTTTTTCAAAATTGTTTCAAAGGTTTATAGAAGGGATATTTCTGTTAGAGATAGAAACCGATTCCACCATTTTGTTGGAGGTGCTTGTTCTTGCAAAGATTATTGGTGA | 1848 | 0.4205 | MKRSVKSFLQARSNLSQWTHNLTIRPSSTSALTLCENPPQITESKHSHLTKSISNHAHMNQMLSQMIMNYIPIDHLNLMKLIDFSVSSHGFAASALLFTQFYGFIDSDLCNSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYVADTGMASYDIEEEEKEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKIVSKVYRRDISVRDRNRFHHFVGGACSCKDYW* | 616 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi17g0673 | 615 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 308 | 342 | IPR002885 | - | |
| Vvi17g0673 | 615 | Pfam | DYW family of nucleic acid deaminases | 523 | 615 | IPR032867 | GO:0008270 | |
| Vvi17g0673 | 615 | Gene3D | Tetratricopeptide repeat domain | 261 | 347 | IPR011990 | GO:0005515 | |
| Vvi17g0673 | 615 | FunFam | Pentatricopeptide repeat-containing protein | 262 | 356 | - | - | |
| Vvi17g0673 | 615 | Gene3D | Tetratricopeptide repeat domain | 348 | 533 | IPR011990 | GO:0005515 | |
| Vvi17g0673 | 615 | FunFam | Pentatricopeptide (PPR) repeat-containing protein | 371 | 534 | - | - | |
| Vvi17g0673 | 615 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 106 | 140 | IPR002885 | - | |
| Vvi17g0673 | 615 | SUPERFAMILY | TPR-like | 288 | 464 | IPR011990 | GO:0005515 | |
| Vvi17g0673 | 615 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 277 | 307 | IPR002885 | - | |
| Vvi17g0673 | 615 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 207 | 241 | IPR002885 | - | |
| Vvi17g0673 | 615 | NCBIfam | pentatricopeptide repeat | 345 | 378 | IPR002885 | - | |
| Vvi17g0673 | 615 | NCBIfam | pentatricopeptide repeat | 310 | 344 | IPR002885 | - | |
| Vvi17g0673 | 615 | NCBIfam | pentatricopeptide repeat | 209 | 241 | IPR002885 | - | |
| Vvi17g0673 | 615 | NCBIfam | pentatricopeptide repeat | 282 | 309 | IPR002885 | - | |
| Vvi17g0673 | 615 | NCBIfam | pentatricopeptide repeat | 110 | 142 | IPR002885 | - | |
| Vvi17g0673 | 615 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 206 | 552 | IPR046960 | GO:0003723|GO:0009451 | |
| Vvi17g0673 | 615 | Pfam | PPR repeat family | 307 | 356 | IPR002885 | - | |
| Vvi17g0673 | 615 | Pfam | PPR repeat family | 206 | 254 | IPR002885 | - | |
| Vvi17g0673 | 615 | Pfam | E motif | 425 | 487 | IPR046848 | - | |
| Vvi17g0673 | 615 | FunFam | Pentatricopeptide repeat-containing protein At3g16610 | 108 | 261 | - | - | |
| Vvi17g0673 | 615 | Gene3D | Tetratricopeptide repeat domain | 158 | 260 | IPR011990 | GO:0005515 | |
| Vvi17g0673 | 615 | Pfam | PPR repeat | 110 | 138 | IPR002885 | - | |
| Vvi17g0673 | 615 | Pfam | PPR repeat | 382 | 406 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi17g0673 | Vvi-Chr17 | 7343336 | 7345183 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi17g0673 | 121 | 615 | Glycoside Hydrolase | AT3G49170 | 37.000 | 3.69e-115 | 362 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi17g0673 | - | - | vvi:100256967 | 1256.12 |