Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00623 ATGGTTTCTGAGACAAGCCAATGTCGATCCAAGAACGTGTGCGTGATTGGAGCTGGACCATCGGGGCTAGTGGCAGCGAGGGAATTAAGGAAAGAGGGTCATGAGGTGGTCGTGTTGGAGCAGAATCATGATGTTGGAGGCCAGTGGCTATATGAGGCCAACGTGGAAGGTGAGGACCCTTTGGGGAGAAACCACTTTCTAAAGGTGCATAGTAGCATGTACGAGTCCTTGAGGCTCACATCTCCACGTGAGATCATGGGGTTCTCTGATTTTCCCTTTTTGGTCAAGAAGGGTAGAGACATGAGGAGGTTCCCTAGCCACACTGAGCTGCTTCTCTACTTGAAGGACTTTTGTGACTGCTTTGGCTTGAGGGAGATGATCAGGTTCAACACGAGGGTGGACCATGTGGGGATGTTGGATTATGGTGTTTGTGCTAATGATTTGAAGTGGGTTGTTAGAAGCATGGATAAGAAGAGTGAGAAGGTGGTGGAAGAGGTGTTTGATGCAGTGGTTGTGGCCACTGGTCATTACTCTCAACCAAGATTGCCATCATCCATTAAAGGAATGGATACATGGAAAAGGAAACAAATGCATAGTCACATTTACAGGACTCCAGAACCATTCCGCAACGAGATTGTGGTGGTGGTTGGAAATTCCTTAAGTGGGCAAGACATATCAATAGAGCTTGTGGAGGTGGCAAAGGAGGTCCACATGAGTTCCAGATCTCTTAAAATCTCTGAGGGTTTATCTAAAGTCATATCAAAACATGAGAACTTTCATCTTCATCCACAGATAGACACCCTTCAAGAGGATGGGAGGGTCACATTCGTGGATGGTTCTTCCATTCTTGCAGACTCTATTTTGTACTGCACAGGGTACTCCTATGCATTCCCCTTTCTTGACACCAAAGGAATGGTGGTTATAGATGATGACAGAGTGGGGCCTTTGTATGAGCACACTTTTCCGCCATCCCTTGCTCCATCCCTCTCTTTTATAGGCATCCCTAGAAAGATCATAGGATTCCCTTTCTTTGAGTCCCAAGCAATATGGATAGCTCAACTGCTTTCAGGGAAAAAAGTATTGCCATCATGGGAGGAAATGATGAAATCCATCAAGGAGTTCTACCATTCAAGAGATGCAGCAGGCATTCCCAAACACTGTACTCATGAAATTGCAGACTTTGAGTACTGTGACAAATATGGGGAGAATGTAGGGTTCCCACATATAGAAGAATGGAGGAAACAGCTATGCTTATCAGCCATAATTAACAGTGATGTCAACTTGGAGACATATCGAGATTCGTGGGACGATCATGACCTTCTCCAAGAGGCCCTTCAAAGCCCTCACTTCACTCAACTTCCACCTCAAGATTCTGCCCTGTAA 1383 0.457 MVSETSQCRSKNVCVIGAGPSGLVAARELRKEGHEVVVLEQNHDVGGQWLYEANVEGEDPLGRNHFLKVHSSMYESLRLTSPREIMGFSDFPFLVKKGRDMRRFPSHTELLLYLKDFCDCFGLREMIRFNTRVDHVGMLDYGVCANDLKWVVRSMDKKSEKVVEEVFDAVVVATGHYSQPRLPSSIKGMDTWKRKQMHSHIYRTPEPFRNEIVVVVGNSLSGQDISIELVEVAKEVHMSSRSLKISEGLSKVISKHENFHLHPQIDTLQEDGRVTFVDGSSILADSILYCTGYSYAFPFLDTKGMVVIDDDRVGPLYEHTFPPSLAPSLSFIGIPRKIIGFPFFESQAIWIAQLLSGKKVLPSWEEMMKSIKEFYHSRDAAGIPKHCTHEIADFEYCDKYGENVGFPHIEEWRKQLCLSAIINSDVNLETYRDSWDDHDLLQEALQSPHFTQLPPQDSAL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00623 460 Pfam Flavin-binding monooxygenase-like 11 242 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cca03g00623 460 Pfam Flavin-binding monooxygenase-like 261 388 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cca03g00623 460 SUPERFAMILY FAD/NAD(P)-binding domain 10 252 IPR036188 -
Cca03g00623 460 PIRSF FMO 247 408 IPR000960 GO:0050660|GO:0050661
Cca03g00623 460 PIRSF FMO 9 257 IPR000960 GO:0050660|GO:0050661
Cca03g00623 460 Gene3D - 185 290 IPR036188 -
Cca03g00623 460 SUPERFAMILY FAD/NAD(P)-binding domain 271 418 IPR036188 -
Cca03g00623 460 PANTHER FLAVIN-CONTAINING MONOOXYGENASE FMO GS-OX-LIKE 8 6 454 - -
Cca03g00623 460 Gene3D - 13 434 IPR036188 -
Cca03g00623 460 PRINTS Flavin-containing monooxygenase (FMO) signature 11 27 IPR000960 GO:0050660|GO:0050661
Cca03g00623 460 PRINTS Flavin-containing monooxygenase (FMO) signature 35 59 IPR000960 GO:0050660|GO:0050661
Cca03g00623 460 PRINTS Flavin-containing monooxygenase (FMO) signature 224 239 IPR000960 GO:0050660|GO:0050661
Cca03g00623 460 PRINTS Flavin-containing monooxygenase (FMO) signature 277 304 IPR000960 GO:0050660|GO:0050661
Cca03g00623 460 PRINTS Flavin-containing monooxygenase (FMO) signature 342 355 IPR000960 GO:0050660|GO:0050661
Cca03g00623 460 PANTHER DIMETHYLANILINE MONOOXYGENASE 6 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00623 Cca-Chr3 10948915 10952569 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00623 - - gsj:114416580 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00623 03 10948915 10952569 Cca03g00623 03 10948915 10952569 ECH