Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01990 ATGATGGTTTCGGAAACAAGGGTGGAATCCAAGATGGTGTGCGTGATCGGAGCTGGACCATCGGGTCTAGTAGCCGCAAGGGAGCTTGTGAGAGAAGGTCACAAGGTGGTTGTACTCGAGCAGAACCGCGACATTGGAGGCCAATGGCTTTACGACCCTAACGTACAACACGAGGATCCTTTGGGAGCAAACCCTTGGCTCAAGGTGCATAGCAGCATTTACCACTCTTTGAGGCTCATGTCTCCCAGGGAAGTCATGGGTTTCACCGATTTCCCTTTTTTGGTGAAGAAAGGTAGAGACCCCAGGAGGTTCCCTGGCCACAGAGAGCTCCTTCTCTACCTCAAGGACTTTGCTCAGTGGTTCAACTTGGGAGATATCATCAAGTTCAACACCAAGGTCCATTACGTGGGACCCTTCAATTATGGAGCTGGAGCCTCTAGGGAGGATTTGAAGTGGCTTGTCAGAAGCAAGGAGAACAAGGGTGATCATGAGGAGGAACTTGAACAACTCTTTGATGCTGTCGTTGTCGCCACTGGTCATTACTCTAACCCCAGATTGCCCTCCATTCAAGGAATGGACACATGGAGAAGAAAACAAATGCATAGTCACATTTACAGGTCTCCACACCCATTTCGCGGAGAGATTGTGGTGGTGATTGGAAATTCTTTTAGTGGACAAGAAATATCATTGGAACTTGTGAAAGTAGCCAAGGAAGTACACCTCAGTTCAAAAATAGTTGACATTTATGAGGGTTTATCTAAAGTCATATCCAAACACGACAACTTTCACTTCCATCCACAGATAGACACCCTTCAAGAGGATGGGAGTGTCATTTTCACGGATGGTTCCAAAATTATCGCCGACACTATCTTATACTGCACTGGGTACAACTATTCCTTCCCCTTTCTCGACACCAAAGGAATTGTTGTTGTGGATGATAACAGAGTGGGTCCTTTGTATGAACACACTTTCCCCCCAGCACTTGCTCCTTCTCTTTCCTTAGTAGGCATTCCCAAAAGGGTAAATTAA 1029 0.4655 MMVSETRVESKMVCVIGAGPSGLVAARELVREGHKVVVLEQNRDIGGQWLYDPNVQHEDPLGANPWLKVHSSIYHSLRLMSPREVMGFTDFPFLVKKGRDPRRFPGHRELLLYLKDFAQWFNLGDIIKFNTKVHYVGPFNYGAGASREDLKWLVRSKENKGDHEEELEQLFDAVVVATGHYSNPRLPSIQGMDTWRRKQMHSHIYRSPHPFRGEIVVVIGNSFSGQEISLELVKVAKEVHLSSKIVDIYEGLSKVISKHDNFHFHPQIDTLQEDGSVIFTDGSKIIADTILYCTGYNYSFPFLDTKGIVVVDDNRVGPLYEHTFPPALAPSLSLVGIPKRVN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01990 342 SUPERFAMILY FAD/NAD(P)-binding domain 216 314 IPR036188 -
Cca11g01990 342 PIRSF FMO 252 341 IPR000960 GO:0050660|GO:0050661
Cca11g01990 342 PIRSF FMO 9 248 IPR000960 GO:0050660|GO:0050661
Cca11g01990 342 PRINTS Flavin-containing monooxygenase (FMO) signature 11 27 IPR000960 GO:0050660|GO:0050661
Cca11g01990 342 PRINTS Flavin-containing monooxygenase (FMO) signature 200 214 IPR000960 GO:0050660|GO:0050661
Cca11g01990 342 PRINTS Flavin-containing monooxygenase (FMO) signature 227 242 IPR000960 GO:0050660|GO:0050661
Cca11g01990 342 PRINTS Flavin-containing monooxygenase (FMO) signature 280 307 IPR000960 GO:0050660|GO:0050661
Cca11g01990 342 PRINTS Flavin-containing monooxygenase (FMO) signature 329 342 IPR000960 GO:0050660|GO:0050661
Cca11g01990 342 Gene3D - 11 341 IPR036188 -
Cca11g01990 342 Gene3D - 188 293 IPR036188 -
Cca11g01990 342 PANTHER DIMETHYLANILINE MONOOXYGENASE 6 340 - -
Cca11g01990 342 Coils Coil 153 173 - -
Cca11g01990 342 SUPERFAMILY FAD/NAD(P)-binding domain 13 241 IPR036188 -
Cca11g01990 342 Pfam Flavin-binding monooxygenase-like 265 337 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cca11g01990 342 Pfam Flavin-binding monooxygenase-like 11 244 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cca11g01990 342 PANTHER FLAVIN-CONTAINING MONOOXYGENASE FMO GS-OX-LIKE 8 6 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01990 Cca-Chr11 45337983 45341165 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01990 - - gmx:100817010 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01990 11 45337983 45341165 Cca11g01990 11 45337983 45341165 ECH