Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi16g0749 . . . . . Adu05g00946 . Aed11g1685 Aev05g2978 . Ahy15g3442 . Aip05g03746 . . . . . . . . . . Bach4g00190 . . . Bva04g01091 . . . Cca06g01759 . . Dod02g3119 . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g01253 . . . . . . . . . . . . . . . Mepo5g00399 . Mesa17g00401 . . . . . Phac2g00516 . Phco4g00361 . . Psa2g4134 . . Pste1g00524 . . Pte14g01237 . . Pumo8g02268 . Pvu2g1582 . Rops1g02138 . Seca12g01826 . Spst2g00350 . Ssu2g2814 . . . . . Trre9g00419 . . . Vian10g00310 . Vifa1g07838 . Vimu7g02492 . Viun2g02525 . Vivi2g03799 . Vra11g0317
Vvi16g0750 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0751 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0752 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal1g0802 Lal2g0890 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0753 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0754 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0755 . . . . Adu05g03582 . . . . . . . . . . . . . . . Arst5g02680 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco5g01240 . . . . . . . Pte16g00532 Pte9g00573 . . . . Pvu4g0798 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0756 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0757 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0758 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Adu Adu05g00946 Chr05 12147554 12150820 +
Aed Aed11g1685 Chr11 20565183 20570557 -
Bach Bach4g00190 Chr4 1270200 1274519 +
Cca Cca06g01759 Chr06 32875043 32882373 -
Lapu Lapu3g01253 Chr3 13551137 13555986 +
Lapu Lapu3g01253 Chr3 13551137 13555986 +
Mepo Mepo5g00399 Chr5 3542068 3547249 +
Mesa Mesa17g00401 Chr17 4644622 4649178 +
Phac Phac2g00516 Chr2 2586388 2591918 +
Phco Phco4g00361 Chr4 2345902 2351410 +
Psa Psa2g4134 Chr2 420337476 420342340 -
Pste Pste1g00524 Chr1 1676685 1682985 +
Pte Pte14g01237 Chr14 33650922 33654936 -
Pte Pte14g01237 Chr14 33650922 33654936 -
Pumo Pumo8g02268 Chr8 59838580 59844336 -
Pvu Pvu2g1582 Chr2 29464990 29470318 -
Rops Rops1g02138 Chr1 42650185 42655459 -
Seca Seca12g01826 Chr12 20886113 20890958 +
Spst Spst2g00350 Chr2 2740599 2745959 +
Ssu Ssu2g2814 Chr2 89085172 89091691 -
Trre Trre9g00419 Chr9 3043492 3047587 +
Vian Vian10g00310 Chr10 2843115 2847917 +
Vifa Vifa1g07838 Chr1 1224066638 1224070648 -
Vimu Vimu7g02492 Chr7 21278298 21283122 +
Vimu Vimu7g02492 Chr7 21278298 21283122 +
Viun Viun2g02525 Chr2 31503421 31508914 -
Vivi Vivi2g03799 Chr2 149345312 149349119 -
Vra Vra11g0317 Chr11 2284430 2289601 +
Pte Pte16g00532 Chr16 9410124 9416703 +
Lal Lal2g0890 Chr2 5850939 5855955 -
Vvi Vvi16g0749 Chr16 15214117 15221974 -
Adu Adu05g00946 Chr05 12147554 12150820 +
Aed Aed11g1685 Chr11 20565183 20570557 -
Aev Aev05g2978 Chr05 30453131 30457198 +
Ahy Ahy15g3442 Chr15 157001809 157006145 -
Aip Aip05g03746 Chr05 145560987 145565305 -
Bach Bach4g00190 Chr4 1270200 1274519 +
Bva Bva04g01091 Chr04 7247840 7253663 -
Cca Cca06g01759 Chr06 32875043 32882373 -
Dod Dod02g3119 Chr02 65977495 65983471 +
Lapu Lapu3g01253 Chr3 13551137 13555986 +
Mepo Mepo5g00399 Chr5 3542068 3547249 +
Mesa Mesa17g00401 Chr17 4644622 4649178 +
Phac Phac2g00516 Chr2 2586388 2591918 +
Phco Phco4g00361 Chr4 2345902 2351410 +
Psa Psa2g4134 Chr2 420337476 420342340 -
Pste Pste1g00524 Chr1 1676685 1682985 +
Pte Pte14g01237 Chr14 33650922 33654936 -
Pumo Pumo8g02268 Chr8 59838580 59844336 -
Pvu Pvu2g1582 Chr2 29464990 29470318 -
Rops Rops1g02138 Chr1 42650185 42655459 -
Seca Seca12g01826 Chr12 20886113 20890958 +
Spst Spst2g00350 Chr2 2740599 2745959 +
Ssu Ssu2g2814 Chr2 89085172 89091691 -
Trre Trre9g00419 Chr9 3043492 3047587 +
Vian Vian10g00310 Chr10 2843115 2847917 +
Vifa Vifa1g07838 Chr1 1224066638 1224070648 -
Vimu Vimu7g02492 Chr7 21278298 21283122 +
Viun Viun2g02525 Chr2 31503421 31508914 -
Vivi Vivi2g03799 Chr2 149345312 149349119 -
Vra Vra11g0317 Chr11 2284430 2289601 +
Vvi Vvi16g0750 Chr16 15242587 15242838 +
Vvi Vvi16g0751 Chr16 15247303 15247599 -
Vvi Vvi16g0752 Chr16 15273136 15273594 +
Lal Lal1g0802 Chr1 5464984 5470494 -
Lal Lal2g0890 Chr2 5850939 5855955 -
Vvi Vvi16g0753 Chr16 15275911 15276383 +
Vvi Vvi16g0754 Chr16 15277260 15277651 -
Vvi Vvi16g0755 Chr16 15291250 15292230 -
Adu Adu05g03582 Chr05 108208137 108209431 -
Arst Arst5g02680 Chr5 81302512 81304207 -
Phco Phco5g01240 Chr5 46391659 46396237 -
Pte Pte16g00532 Chr16 9410124 9416703 +
Pte Pte9g00573 Chr9 8402785 8412850 -
Pvu Pvu4g0798 Chr4 12065949 12067283 +
Vvi Vvi16g0756 Chr16 15307914 15310516 -
Vvi Vvi16g0757 Chr16 15320992 15321333 -
Vvi Vvi16g0758 Chr16 15323713 15323937 -