Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1685 ATGGCAAAGAATGTGGGGATTCTCGCCATTGACATCTACTTCCCTCCCGCGTGCGTTCAGCAGGAAGCATTGGAGGCTCATGATGGTGCCAGTAAAGGGAAGTATACCATTGGACTTGGACAAGATTGCATGTCATTCTGTACCGAAGTAGAAGATGTCATCTCAATGAGTTTGACAGTGGTTACTTCTCTTCTTGAGAAGTATGGGATTGATCCTAAACGAATTGGTCGTCTGGAAGTTGGAAGTGAGACTGTGATAGACAAAAGCAAATCCATTAAGACATTCCTGATGCAGATCTTCGAGGAATATGGAAATACTGACATTGAGGGTGTTGATTCAACTAATGCATGCTACGGAGGAACTGCTGCTCTGTTTAACTGCGTCAATTGGGTGGAGAGCAATTCATGGGATGGACGCTATGGACTTGTTGTCTGCACTGACAGTGCAGTCTATGCTGAAGGACCTGCTCGACCTACTGGAGGAGCTGCTGCTATTGCCCTGCTAATTGGTCCTGATGCTCCCATTTCTTTTGAAAGCAAATTGAGAGGAAGTCATATGTCTCATGTTTATGATTTTTACAAGCCTAATCTTTCTAGTGAATATCCAGTTGTCGATGGAAAGCTTTCACAAACTTGTTACCTCATGGCTCTTGATTCTTGCTATAATAATTTCTGTCACAAGTATGAGAAATTCGAGGGAAAACAATTTTCTCTTTCTGATGCTGAATACTTTGTATTTCACTCTCCTTATAACAAGCTTGTACAGAAGAGTTTTGGTCGGTTGTTTTTCAATGACTTCTTGAAGAATCCCAGCTCTGTGGATGAGGTTGCCAAAGAAAAGCTGGGACCTTTTGCAGCTTTATCTGGTGATGAGAGCTACCAAAGTCGGGATCTTGAAAAGGCATCCCAGCAATTTGCAAAGCCTCTATATGATCAGAAGGTACAACCAACTACTTTGATTCCAAAGCAAGTTGGAAACATGTACACTGCGTCTCTCTATGCAGCATTTGCCTCACTTATTCACAACAAACATAGCACATTGGCAGGCAAGAGGGTGATATTATTTTCATACGGAAGTGGCTTAACTGCCACATTGTTTTCTTTGCAATTACGAGACAGTCAACATCCATTTAGCTTGTCAAACATTGCTAGAGTAATGGATGTCGATGGAAAATTGAAGTCAAGACACGAGTTTCCTCCGGAGGAGTTTATTGAAACCCTGAAGCTGATGGAGCATAGGTATGGTGCGAAGGAATTTGTGACAAGCAAGGACAGTAGCATTTTATCTCCAGGCACATTCTATCTCACTGAAGTTGACTCCATGTATCGGAGATTCTATTCAAAGAAAACTAAAGAAAGCAGTTTGACTCCAGCTGAGAACGGTACTGTGATTGCTAATGGCGTTGCTAATGGCCACTGA 1419 0.4228 MAKNVGILAIDIYFPPACVQQEALEAHDGASKGKYTIGLGQDCMSFCTEVEDVISMSLTVVTSLLEKYGIDPKRIGRLEVGSETVIDKSKSIKTFLMQIFEEYGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIALLIGPDAPISFESKLRGSHMSHVYDFYKPNLSSEYPVVDGKLSQTCYLMALDSCYNNFCHKYEKFEGKQFSLSDAEYFVFHSPYNKLVQKSFGRLFFNDFLKNPSSVDEVAKEKLGPFAALSGDESYQSRDLEKASQQFAKPLYDQKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSTLAGKRVILFSYGSGLTATLFSLQLRDSQHPFSLSNIARVMDVDGKLKSRHEFPPEEFIETLKLMEHRYGAKEFVTSKDSSILSPGTFYLTEVDSMYRRFYSKKTKESSLTPAENGTVIANGVANGH 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1685 472 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Aed11g1685 472 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 449 IPR013746 GO:0004421|GO:0006084|GO:0010142
Aed11g1685 472 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 174 IPR013528 -
Aed11g1685 472 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Aed11g1685 472 CDD init_cond_enzymes 4 368 - -
Aed11g1685 472 Gene3D - 1 451 IPR016039 GO:0016746
Aed11g1685 472 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 449 - -
Aed11g1685 472 SUPERFAMILY Thiolase-like 176 447 IPR016039 GO:0016746
Aed11g1685 472 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 2 449 IPR010122 GO:0004421|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1685 Aed-Chr11 20565183 20570557 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1685 K01641 - gmx:100782595 894.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1685 11 20565183 20570557 Aed11g1685 11 20565183 20570557 ECH
Aed6g0457 6 3985488 3990495 Aed11g1685 11 20565183 20570557 PCT